Identification of a Novel Ferroptosis-Related Gene Signature for Prediction of Prognosis in Bladder Urothelial Carcinoma.

IF 1 4区 医学 Q4 ONCOLOGY
Bladder Cancer Pub Date : 2022-03-11 eCollection Date: 2022-01-01 DOI:10.3233/BLC-211522
Xiaokai Shi, Xiao Zhou, Lei Zhang, Chuang Yue, Shenglin Gao, Jiasheng Cheng, Li Zuo, Lifeng Zhang
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引用次数: 0

Abstract

Background: sBladder urothelial carcinoma is the most prevalent type of bladder cancer, characterized by drug resistance, high recurrence rate, and unfavorable prognosis. Ferroptosis is a newly discovered type of non-apoptotic cell death, which has been reported to be strongly correlated with tumor occurrence and development.

Objective: In this study, we characterized ferroptosis-specific biomarkers to elucidate the association between ferroptosis-related genes (FRGs) and bladder urothelial carcinoma.

Methods: The TCGA and GEO database were adopted to obtain data and corresponding clinicopathological information. Univariate and multivariate cox regression were performed to establish a ferroptosis-related model. Besides, the KM plot visualized prognosis between high risk and low risk groups. Moreover, cBioportal platform was used to gather information on genetic alteration and DNA methylation of hub FRGs in BLCA patients. Additionally, the GSEA software was used to detect the difference in gene expression between high-risk and low-risk subgroups.

Results: Six ferroptosis-related genes were identified to be highly correlated with overall survival. Besides, we explored the genetic variations of these FRGs, as well as the correlation between FRG expression and copy number values. Additionally, the DNA methylation status of these FRGs was determined. Moreover, we constructed a ferroptosis risk model with the six FRGs to predict the prognosis of BLCA. The results demonstrated that a higher risk score indicated an unfavorable prognosis. The ferroptosis signature was associated with clinical and molecular characteristics and could be regarded as an independent prognostic factor for BLCA patients.

Conclusions: In summary, we established and verified a ferroptosis risk model which had the potential to independently predict the prognosis of bladder urothelial carcinoma.

一种预测膀胱尿路上皮癌预后的新铁中毒相关基因标记的鉴定
背景:膀胱尿路上皮癌是癌症最常见的类型,具有耐药性高、复发率高、预后不良等特点。Ferroptosis是一种新发现的非凋亡细胞死亡类型,据报道与肿瘤的发生和发展密切相关。目的:在本研究中,我们对脱铁性贫血特异性生物标志物进行了表征,以阐明脱铁性相关基因(FRG)与膀胱尿路上皮癌之间的关系。方法:采用TCGA和GEO数据库获取数据和相应的临床病理信息。采用单因素和多因素cox回归建立脱铁症相关模型。此外,KM图显示了高危组和低危组之间的预后。此外,cBioportal平台用于收集BLCA患者中枢FRG的基因改变和DNA甲基化信息。此外,GSEA软件用于检测高风险和低风险亚组之间基因表达的差异。最后,结果:6个脱铁性贫血相关基因被鉴定为与总生存率高度相关。此外,我们还探讨了这些FRG的遗传变异,以及FRG表达与拷贝数之间的相关性。此外,还测定了这些FRG的DNA甲基化状态。此外,我们构建了一个具有六个FRG的脱铁性贫血风险模型来预测BLCA的预后。结果表明,较高的风险评分表明预后不良。脱铁性贫血特征与临床和分子特征相关,可作为BLCA患者的独立预后因素。结论:总之,我们建立并验证了一个脱铁性贫血风险模型,该模型有可能独立预测膀胱尿路上皮癌的预后。
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来源期刊
Bladder Cancer
Bladder Cancer Medicine-Urology
CiteScore
1.60
自引率
0.00%
发文量
35
期刊介绍: Bladder Cancer is an international multidisciplinary journal to facilitate progress in understanding the epidemiology/etiology, genetics, molecular correlates, pathogenesis, pharmacology, ethics, patient advocacy and survivorship, diagnosis and treatment of tumors of the bladder and upper urinary tract. The journal publishes research reports, reviews, short communications, and letters-to-the-editor. The journal is dedicated to providing an open forum for original research in basic science, translational research and clinical medicine that expedites our fundamental understanding and improves treatment of tumors of the bladder and upper urinary tract.
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