Unsupervised Deep learning-based Feature Fusion Approach for Detection and Analysis of COVID-19 using X-ray and CT Images

Q3 Computer Science
Vinayakumar Ravi, T. Pham
{"title":"Unsupervised Deep learning-based Feature Fusion Approach for Detection and Analysis of COVID-19 using X-ray and CT Images","authors":"Vinayakumar Ravi, T. Pham","doi":"10.2174/18750362-v15-e2207290","DOIUrl":null,"url":null,"abstract":"\n \n This study investigates an unsupervised deep learning-based feature fusion approach for the detection and analysis of COVID-19 using chest X-ray (CXR) and Computed tomography (CT) images.\n \n \n \n The outbreak of COVID-19 has affected millions of people all around the world and the disease is diagnosed by the reverse transcription-polymerase chain reaction (RT-PCR) test which suffers from a lower viral load, and sampling error, etc. Computed tomography (CT) and chest X-ray (CXR) scans can be examined as most infected people suffer from lungs infection. Both CT and CXR imaging techniques are useful for the COVID-19 diagnosis at an early stage and it is an alternative to the RT-PCR test.\n \n \n \n The manual diagnosis of CT scans and CXR images are labour-intensive and consumes a lot of time. To handle this situation, many AI-based solutions are researched including deep learning-based detection models, which can be used to help the radiologist to make a better diagnosis. However, the availability of annotated data for COVID-19 detection is limited due to the need for domain expertise and expensive annotation cost. Also, most existing state-of-the-art deep learning-based detection models follow a supervised learning approach. Therefore, in this work, we have explored various unsupervised learning models for COVID-19 detection which does not need a labelled dataset.\n \n \n \n In this work, we propose an unsupervised deep learning-based COVID-19 detection approach that incorporates the feature fusion method for performance enhancement. Four different sets of experiments are run on both CT and CXR scan datasets where convolutional autoencoders, pre-trained CNNs, hybrid, and PCA-based models are used for feature extraction and K-means and GMM techniques are used for clustering.\n \n \n \n The maximum accuracy of 84% is achieved by the model Autoencoder3-ResNet50 (GMM) on the CT dataset and for the CXR dataset, both Autoencoder1-VGG16 (KMeans and GMM) models achieved 70% accuracy.\n \n \n \n Our proposed deep unsupervised learning, feature fusion-based COVID-19 detection approach achieved promising results on both datasets. It also outperforms four well-known existing unsupervised approaches.\n","PeriodicalId":38956,"journal":{"name":"Open Bioinformatics Journal","volume":"1 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2022-09-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Open Bioinformatics Journal","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.2174/18750362-v15-e2207290","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Computer Science","Score":null,"Total":0}
引用次数: 0

Abstract

This study investigates an unsupervised deep learning-based feature fusion approach for the detection and analysis of COVID-19 using chest X-ray (CXR) and Computed tomography (CT) images. The outbreak of COVID-19 has affected millions of people all around the world and the disease is diagnosed by the reverse transcription-polymerase chain reaction (RT-PCR) test which suffers from a lower viral load, and sampling error, etc. Computed tomography (CT) and chest X-ray (CXR) scans can be examined as most infected people suffer from lungs infection. Both CT and CXR imaging techniques are useful for the COVID-19 diagnosis at an early stage and it is an alternative to the RT-PCR test. The manual diagnosis of CT scans and CXR images are labour-intensive and consumes a lot of time. To handle this situation, many AI-based solutions are researched including deep learning-based detection models, which can be used to help the radiologist to make a better diagnosis. However, the availability of annotated data for COVID-19 detection is limited due to the need for domain expertise and expensive annotation cost. Also, most existing state-of-the-art deep learning-based detection models follow a supervised learning approach. Therefore, in this work, we have explored various unsupervised learning models for COVID-19 detection which does not need a labelled dataset. In this work, we propose an unsupervised deep learning-based COVID-19 detection approach that incorporates the feature fusion method for performance enhancement. Four different sets of experiments are run on both CT and CXR scan datasets where convolutional autoencoders, pre-trained CNNs, hybrid, and PCA-based models are used for feature extraction and K-means and GMM techniques are used for clustering. The maximum accuracy of 84% is achieved by the model Autoencoder3-ResNet50 (GMM) on the CT dataset and for the CXR dataset, both Autoencoder1-VGG16 (KMeans and GMM) models achieved 70% accuracy. Our proposed deep unsupervised learning, feature fusion-based COVID-19 detection approach achieved promising results on both datasets. It also outperforms four well-known existing unsupervised approaches.
基于无监督深度学习的新冠肺炎x射线和CT图像检测与分析方法
本研究研究了一种基于无监督深度学习的特征融合方法,用于使用胸部x射线(CXR)和计算机断层扫描(CT)图像检测和分析COVID-19。2019冠状病毒病(COVID-19)的爆发影响了全球数百万人,该疾病的诊断是通过逆转录聚合酶链反应(RT-PCR)检测,该检测具有病毒载量较低,采样误差等缺点。计算机断层扫描(CT)和胸部x光扫描(CXR)可以检查,因为大多数感染者患有肺部感染。CT和CXR成像技术对COVID-19的早期诊断都很有用,是RT-PCR检测的替代方法。CT扫描和CXR图像的人工诊断是劳动密集型的,耗费大量时间。为了处理这种情况,研究了许多基于人工智能的解决方案,包括基于深度学习的检测模型,可以用来帮助放射科医生做出更好的诊断。然而,由于需要领域专业知识和昂贵的注释成本,用于COVID-19检测的注释数据的可用性受到限制。此外,大多数现有的最先进的基于深度学习的检测模型都遵循监督学习方法。因此,在这项工作中,我们探索了各种用于COVID-19检测的无监督学习模型,这些模型不需要标记数据集。在这项工作中,我们提出了一种基于无监督深度学习的COVID-19检测方法,该方法结合了特征融合方法来增强性能。在CT和CXR扫描数据集上运行四组不同的实验,其中使用卷积自编码器、预训练cnn、混合模型和基于pca的模型进行特征提取,使用K-means和GMM技术进行聚类。模型Autoencoder3-ResNet50 (GMM)在CT数据集上达到了84%的最大准确率,对于CXR数据集,Autoencoder1-VGG16 (KMeans和GMM)模型都达到了70%的准确率。我们提出的基于深度无监督学习、特征融合的COVID-19检测方法在两个数据集上都取得了很好的结果。它也优于现有的四种众所周知的无监督方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Open Bioinformatics Journal
Open Bioinformatics Journal Computer Science-Computer Science (miscellaneous)
CiteScore
2.40
自引率
0.00%
发文量
4
期刊介绍: The Open Bioinformatics Journal is an Open Access online journal, which publishes research articles, reviews/mini-reviews, letters, clinical trial studies and guest edited single topic issues in all areas of bioinformatics and computational biology. The coverage includes biomedicine, focusing on large data acquisition, analysis and curation, computational and statistical methods for the modeling and analysis of biological data, and descriptions of new algorithms and databases. The Open Bioinformatics Journal, a peer reviewed journal, is an important and reliable source of current information on the developments in the field. The emphasis will be on publishing quality articles rapidly and freely available worldwide.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信