Hydrogen bonding patterns and C-H...π interactions in the structure of the antiparkinsonian drug (R)-rasagiline mesylate determined using laboratory and synchrotron X-ray powder diffraction data.

IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY
Analio J Dugarte-Dugarte, Robert A Toro, Jacco van de Streek, José Antonio Henao, Andrew N Fitch, Catherine Dejoie, José Miguel Delgado, Graciela Díaz de Delgado
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引用次数: 0

Abstract

The structure of (R)-rasagiline mesylate [(R)-RasH+·Mes-], an active pharmaceutical ingredient used to treat Parkinson's disease, is presented. The structure was determined from laboratory and synchrotron powder diffraction data, refined using the Rietveld method, and validated and optimized using dispersion-corrected DFT calculations. The unit-cell parameters obtained in both experiments are in good agreement and the refinement with both datasets converged to good agreement factors. The final parameters obtained from laboratory data were a = 5.4905 (8), b = 6.536 (2), c = 38.953 (3) Å, V = 1398.0 (4) Å3 and from synchrotron powder data were a = 5.487530 (10) Å, b = 6.528939 (12) Å, c = 38.94313 (9) Å, V = 1395.245 (5) Å3 with Z = 4 and space group P212121. Preferred orientation was properly accounted for using the synchrotron radiation data, leading to a March-Dollase parameter of 1.140 (1) instead of the 0.642 (1) value obtained from laboratory data. In the structure, (R)-RasH+ moieties form layers parallel to the ab plane connected by mesylate ions through N-H...O and C-H...O hydrogen bonds. These layers stack along the c axis and are further connected by C-H...π interactions. Hirshfeld surface analysis and fingerprint plot calculations indicate that the main interactions are: H...H (50.9%), H...C/C...H (27.1%) and H...O/O...H (21.1%).

Abstract Image

氢键模式和碳氢键…使用实验室和同步加速器x射线粉末衍射数据确定抗帕金森药物(R)-甲磺酸雷沙吉兰结构中的π相互作用。
介绍了用于治疗帕金森病的活性药物成分(R)-甲磺酸拉沙吉林[(R)-RasH+·Mes-]的结构。该结构由实验室和同步加速器粉末衍射数据确定,使用Rietveld方法进行细化,并使用色散校正DFT计算进行验证和优化。在两个实验中获得的晶胞参数具有良好的一致性,并且两个数据集的精化收敛到良好的一致因子。从实验室数据中获得的最终参数为a=5.4905 (8) ,b=6.536 (2) ,c=38.953 (3) Å,V=1398.0 (4) Å3和同步加速器粉末数据为a=5.487530 (10) Å,b=6.528939 (12) Å,c=38.94313 (9) Å,V=1395.245 (5) Å3和空间群P212121。使用同步加速器辐射数据正确解释了优选的取向,导致March Dollase参数为1.140 (1) 而不是0.642 (1) 从实验室数据中获得的值。在该结构中,(R)-RasH+部分形成平行于ab平面的层,由甲磺酸根离子通过N-H连接。。。O和C-H。。。O氢键。这些层沿着c轴堆叠,并通过c-H进一步连接。。。π相互作用。Hirshfeld表面分析和指纹图谱计算表明,主要的相互作用是:H…H(50.9%)、H…C/C…H(27.1%)和H…O/O…H(21.1%)。
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来源期刊
Acta crystallographica Section B, Structural science, crystal engineering and materials
Acta crystallographica Section B, Structural science, crystal engineering and materials CHEMISTRY, MULTIDISCIPLINARYCRYSTALLOGRAPH-CRYSTALLOGRAPHY
CiteScore
3.60
自引率
5.30%
发文量
0
期刊介绍: Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials publishes scientific articles related to the structural science of compounds and materials in the widest sense. Knowledge of the arrangements of atoms, including their temporal variations and dependencies on temperature and pressure, is often the key to understanding physical and chemical phenomena and is crucial for the design of new materials and supramolecular devices. Acta Crystallographica B is the forum for the publication of such contributions. Scientific developments based on experimental studies as well as those based on theoretical approaches, including crystal-structure prediction, structure-property relations and the use of databases of crystal structures, are published.
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