Clinical report classification using Natural Language Processing and Topic Modeling.

Abstract

Large amount of electronic clinical data encompasses important information in free text format. To be able to help guide medical decision-making, text needs to be efficiently processed and coded. In this research, we investigate techniques to improve classification of Emergency Department computed tomography (CT) reports. The proposed system uses Natural Language Processing (NLP) to generate structured output from the reports and then machine learning techniques to code for the presence of clinically important injuries for traumatic orbital fracture victims. Topic modeling of the corpora is also utilized as an alternative representation of the patient reports. Our results show that both NLP and topic modeling improves raw text classification results. Within NLP features, filtering the codes using modifiers produces the best performance. Topic modeling shows mixed results. Topic vectors provide good dimensionality reduction and get comparable classification results as with NLP features. However, binary topic classification fails to improve upon raw text classification.