Human deleterious mutation rate slows adaptation and implies high fitness variance.

Joseph Matheson, Ulises Hernández, Jason Bertram, Joanna Masel
{"title":"Human deleterious mutation rate slows adaptation and implies high fitness variance.","authors":"Joseph Matheson, Ulises Hernández, Jason Bertram, Joanna Masel","doi":"10.1101/2023.09.01.555871","DOIUrl":null,"url":null,"abstract":"<p><p>Each new human has an expected <i>U</i> <sub><i>d</i></sub> = 2-10 new deleterious mutations. Using a novel approach to capture complex linkage disequilibria from high <i>U</i> <sub><i>d</i></sub> using genome-wide simulations, we confirm that fitness decline due to the fixation of many slightly deleterious mutations can be compensated by rarer beneficial mutations of larger effect. The evolution of increased genome size and complexity have previously been attributed to a similarly asymmetric pattern of fixations, but we propose that the cause might be high <i>U</i> <sub><i>d</i></sub> rather than the small population size posited as causal by drift barrier theory. High within-population variance in relative fitness is an inevitable consequence of high <i>U</i> <sub><i>d</i></sub> ∼2-10 combined with inferred human deleterious effect sizes; two individuals will typically differ in fitness by 15-40%. The need to compensate for the deluge of deleterious mutations slows net adaptation (i.e. to the external environment) by ∼13%-55%. The rate of beneficial fixations is more sensitive to changes in the mutation rate than the rate of deleterious fixations is. As a surprising consequence of this, an increase (e.g. 10%) in overall mutation rate leads to faster adaptation; this puts to rest dysgenic fears about increasing mutation rates due to rising paternal age.</p>","PeriodicalId":72407,"journal":{"name":"bioRxiv : the preprint server for biology","volume":" ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2025-03-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10508744/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"bioRxiv : the preprint server for biology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1101/2023.09.01.555871","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

Each new human has an expected U d = 2-10 new deleterious mutations. Using a novel approach to capture complex linkage disequilibria from high U d using genome-wide simulations, we confirm that fitness decline due to the fixation of many slightly deleterious mutations can be compensated by rarer beneficial mutations of larger effect. The evolution of increased genome size and complexity have previously been attributed to a similarly asymmetric pattern of fixations, but we propose that the cause might be high U d rather than the small population size posited as causal by drift barrier theory. High within-population variance in relative fitness is an inevitable consequence of high U d ∼2-10 combined with inferred human deleterious effect sizes; two individuals will typically differ in fitness by 15-40%. The need to compensate for the deluge of deleterious mutations slows net adaptation (i.e. to the external environment) by ∼13%-55%. The rate of beneficial fixations is more sensitive to changes in the mutation rate than the rate of deleterious fixations is. As a surprising consequence of this, an increase (e.g. 10%) in overall mutation rate leads to faster adaptation; this puts to rest dysgenic fears about increasing mutation rates due to rising paternal age.

Abstract Image

Abstract Image

Abstract Image

人类有害突变率意味着高适应度方差,平均适应度的下降由影响更大的罕见有益突变补偿。
每个新人类都有一个预期的U d=2-10个新的有害突变。这种有害突变的泛滥不可能全部清除,因此会积累在一个不断下降的适应度棘轮中。使用一种新的模拟框架,该框架旨在有效地处理许多分离位点的全基因组连锁失衡,我们发现,更罕见、更大效果的有益突变足以补偿由于许多轻微有害突变的固定而导致的适应度下降。漂移屏障理论提出了一种类似的不对称固定模式来解释基因组大小和复杂性的棘轮变化,但在我们的理论中,原因是U d>1,而不是小种群大小。在我们的模拟中,U d~2-10在相对适应度方面产生了较高的群体内方差;两个人的体质通常会相差15-40%。U d~2-10也会使净适应速度减慢~13%~39%。令人惊讶的是,固定率对有益突变率的变化比有害突变率更敏感,例如,总突变率增加10%会导致更快的适应;这消除了由于父亲年龄的增加而导致突变率增加的基因异常恐惧。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信