Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case

IF 1.8 4区综合性期刊 Q2 MULTIDISCIPLINARY SCIENCES

Journal of the Indian Institute of Science Pub Date : 2023-06-21 DOI:10.1007/s41745-023-00368-7

Rekha Seshadri, Nikos C. Kyrpides, Natalia N. Ivanova

引用次数: 1

Abstract

The Integrated Microbial Genomes and Microbiomes (IMG/M) system is a web-based platform that provides access to the wealth of public sequence data arising from diverse environments and enables the user to answer biological questions. In this review, we explore IMG’s tools and features using genome data for genus Deinococcus isolates as well as metagenome-assembled genomes (MAGs). We use various comparative genomic and visualization tools to investigate this genus and address specific research questions.

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使用综合微生物基因组和微生物组（IMG/M）系统的比较基因组学：一个Deinococcus使用案例

综合微生物基因组和微生物组（IMG/M）系统是一个基于网络的平台，可以访问来自不同环境的大量公共序列数据，并使用户能够回答生物学问题。在这篇综述中，我们使用Deinococcus属分离株的基因组数据以及宏基因组组装基因组（MAGs）来探索IMG的工具和特征。我们使用各种比较基因组和可视化工具来调查该属并解决具体的研究问题。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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来源期刊

Journal of the Indian Institute of Science MULTIDISCIPLINARY SCIENCES-

CiteScore

4.30

自引率

0.00%

发文量

期刊介绍： Started in 1914 as the second scientific journal to be published from India, the Journal of the Indian Institute of Science became a multidisciplinary reviews journal covering all disciplines of science, engineering and technology in 2007. Since then each issue is devoted to a specific topic of contemporary research interest and guest-edited by eminent researchers. Authors selected by the Guest Editor(s) and/or the Editorial Board are invited to submit their review articles; each issue is expected to serve as a state-of-the-art review of a topic from multiple viewpoints.