Mathematical modeling of the impact of Omicron variant on the COVID-19 situation in South Korea.

Q2 Agricultural and Biological Sciences
Genomics and Informatics Pub Date : 2022-06-01 Epub Date: 2022-06-22 DOI:10.5808/gi.22025
Jooha Oh, Catherine Apio, Taesung Park
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引用次数: 0

Abstract

The rise of newer coronavirus disease 2019 (COVID-19) variants has brought a challenge to ending the spread of COVID-19. The variants have a different fatality, morbidity, and transmission rates and affect vaccine efficacy differently. Therefore, the impact of each new variant on the spread of COVID-19 is of interest to governments and scientists. Here, we proposed mathematical SEIQRDVP and SEIQRDV3P models to predict the impact of the Omicron variant on the spread of the COVID-19 situation in South Korea. SEIQEDVP considers one vaccine level at a time while SEIQRDV3P considers three vaccination levels (only one dose received, full doses received, and full doses + booster shots received) simultaneously. The omicron variant's effect was contemplated as a weighted sum of the delta and omicron variants' transmission rate and tuned using a hyperparameter k. Our models' performances were compared with common models like SEIR, SEIQR, and SEIQRDVUP using the root mean square error (RMSE). SEIQRDV3P performed better than the SEIQRDVP model. Without consideration of the variant effect, we don't see a rapid rise in COVID-19 cases and high RMSE values. But, with consideration of the omicron variant, we predicted a continuous rapid rise in COVID-19 cases until maybe herd immunity is developed in the population. Also, the RMSE value for the SEIQRDV3P model decreased by 27.4%. Therefore, modeling the impact of any new risen variant is crucial in determining the trajectory of the spread of COVID-19 and determining policies to be implemented.

Abstract Image

Abstract Image

Abstract Image

欧米茄变种对韩国 COVID-19 情况影响的数学建模。
2019年冠状病毒病(COVID-19)新变种的出现为终止COVID-19的传播带来了挑战。这些变种的致死率、发病率和传播率各不相同,对疫苗效力的影响也不尽相同。因此,每个新变种对 COVID-19 传播的影响都引起了政府和科学家的关注。在此,我们提出了 SEIQRDVP 和 SEIQRDV3P 数学模型来预测 Omicron 变种对韩国 COVID-19 传播情况的影响。SEIQEDVP 一次只考虑一种疫苗接种水平,而 SEIQRDV3P 则同时考虑三种疫苗接种水平(只接种一剂、接种全剂和接种全剂+加强针)。奥米克变体的影响被视为德尔塔变体和奥米克变体传播率的加权和,并使用超参数 k 进行调整。我们使用均方根误差 (RMSE) 将模型的性能与 SEIR、SEIQR 和 SEIQRDVUP 等常见模型进行了比较。SEIQRDV3P 的表现优于 SEIQRDVP 模型。在不考虑变异效应的情况下,我们不会看到 COVID-19 病例的迅速增加和高 RMSE 值。但是,如果考虑到奥米克龙变异,我们预测 COVID-19 病例会持续快速上升,直到人群中可能形成群体免疫。此外,SEIQRDV3P 模型的 RMSE 值降低了 27.4%。因此,对任何新的立氏变异体的影响进行建模对于确定 COVID-19 的传播轨迹和确定应实施的政策至关重要。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Genomics and Informatics
Genomics and Informatics Agricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
CiteScore
1.90
自引率
0.00%
发文量
0
审稿时长
12 weeks
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