Comparative Transcriptome Analysis of Flower Senescence of Camellia lutchuensis.

IF 1.8 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Weixin Liu, Hengfu Yin, Yi Feng, Suhang Yu, Zhengqi Fan, Xinlei Li, Jiyuan Li
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引用次数: 3

Abstract

Background: Flower senescence is the last stage of flower development and affects the ornamental and economic value of flower plants. There is still less known on flower senescence of the ornamental plant Camellia lutchuensis, a precious species of Camellia with significant commercial application value.

Methods: Transcriptome sequencing was used to investigate the flower senescence in five developmental stages of C. lutchuensis.

Results: By Illumina HiSeq sequencing, we generated approximately 101.16 Gb clean data and 46649 differentially expressed unigenes. Based on the different expression pattern, differentially expressed unigenes were classified into 10 Sub Class. And Sub Class 9 including 8252 unigenes, was highly expressed in the flower senescent stage, suggesting it had a potential regulatory relationship of flower senescence. First, we found that ethylene biosynthesis genes ACSs, ACOs, receptor ETR genes and signaling genes EINs, ERFs all upregulated during flower senescence, suggesting ethylene might play a key role in the flower senescence of C. lutchuensis. Furthermore, reactive oxygen species (ROS) production related genes peroxidase (POD), lipase (LIP), polyphenoloxidase (PPO), and ROS scavenging related genes glutathione S-transferase (GST), glutathione reductase (GR) and superoxide dismutase (SOD) were induced in senescent stage, suggesting ROS might be involved in the flower senescence. Besides, the expression of monoterpenoid and isoflavonoid biosynthesis genes, transcription factors (WRKY, NAC, MYB and C2H2 ), senescence-associated gene SAG20 also were increased during flower senescence.

Conclusion: In C. lutchuensis, ethylene pathway might be the key to regulate flower senescence, and ROS signal might play a role in the flower senescence.

Abstract Image

Abstract Image

Abstract Image

山茶花衰老的比较转录组分析。
背景:花卉衰老是花卉发育的最后阶段,影响着花卉植物的观赏价值和经济价值。山茶是一种珍贵的山茶属植物,具有重要的商业应用价值。方法:采用转录组测序技术,对金缕梅5个发育阶段的花衰老进行研究。结果:通过Illumina HiSeq测序,我们获得了大约101.16 Gb的干净数据和46649个差异表达的单基因。根据不同的表达模式,将差异表达基因分为10个亚类。亚类9包含8252个单基因,在花衰老阶段高表达,提示其与花衰老具有潜在的调控关系。首先,我们发现乙烯生物合成基因ACSs、ACOs、受体ETR基因和信号转导基因EINs、ERFs在花衰老过程中均有上调,表明乙烯可能在花衰老过程中起关键作用。此外,活性氧(ROS)产生相关基因过氧化物酶(POD)、脂肪酶(LIP)、多酚氧化酶(PPO)以及清除ROS相关基因谷胱甘肽s -转移酶(GST)、谷胱甘肽还原酶(GR)和超氧化物歧化酶(SOD)在衰老阶段被诱导,提示ROS可能参与了花的衰老。此外,单萜类和异黄酮类生物合成基因、转录因子WRKY、NAC、MYB和C2H2以及衰老相关基因SAG20的表达也随着花的衰老而增加。结论:花楸乙烯通路可能是调控花衰老的关键途径,ROS信号可能在花楸衰老过程中发挥作用。
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来源期刊
Current Genomics
Current Genomics 生物-生化与分子生物学
CiteScore
5.20
自引率
0.00%
发文量
29
审稿时长
>0 weeks
期刊介绍: Current Genomics is a peer-reviewed journal that provides essential reading about the latest and most important developments in genome science and related fields of research. Systems biology, systems modeling, machine learning, network inference, bioinformatics, computational biology, epigenetics, single cell genomics, extracellular vesicles, quantitative biology, and synthetic biology for the study of evolution, development, maintenance, aging and that of human health, human diseases, clinical genomics and precision medicine are topics of particular interest. The journal covers plant genomics. The journal will not consider articles dealing with breeding and livestock. Current Genomics publishes three types of articles including: i) Research papers from internationally-recognized experts reporting on new and original data generated at the genome scale level. Position papers dealing with new or challenging methodological approaches, whether experimental or mathematical, are greatly welcome in this section. ii) Authoritative and comprehensive full-length or mini reviews from widely recognized experts, covering the latest developments in genome science and related fields of research such as systems biology, statistics and machine learning, quantitative biology, and precision medicine. Proposals for mini-hot topics (2-3 review papers) and full hot topics (6-8 review papers) guest edited by internationally-recognized experts are welcome in this section. Hot topic proposals should not contain original data and they should contain articles originating from at least 2 different countries. iii) Opinion papers from internationally recognized experts addressing contemporary questions and issues in the field of genome science and systems biology and basic and clinical research practices.
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