Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma.

IF 1.6 3区 工程技术 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Amara Tariq, Omar Kallas, Patricia Balthazar, Scott Jeffery Lee, Terry Desser, Daniel Rubin, Judy Wawira Gichoya, Imon Banerjee
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引用次数: 0

Abstract

Background: Transfer learning is a common practice in image classification with deep learning where the available data is often limited for training a complex model with millions of parameters. However, transferring language models requires special attention since cross-domain vocabularies (e.g. between two different modalities MR and US) do not always overlap as the pixel intensity range overlaps mostly for images.

Method: We present a concept of similar domain adaptation where we transfer inter-institutional language models (context-dependent and context-independent) between two different modalities (ultrasound and MRI) to capture liver abnormalities.

Results: We use MR and US screening exam reports for hepatocellular carcinoma as the use-case and apply the transfer language space strategy to automatically label imaging exams with and without structured template with > 0.9 average f1-score.

Conclusion: We conclude that transfer learning along with fine-tuning the discriminative model is often more effective for performing shared targeted tasks than the training for a language space from scratch.

Abstract Image

Abstract Image

Abstract Image

具有相似域适应的迁移语言空间:以肝细胞癌为例。
背景:迁移学习是深度学习图像分类中的一种常见做法,其中可用数据通常有限,无法训练具有数百万个参数的复杂模型。然而,迁移语言模型需要特别注意,因为跨领域词汇表(例如在两种不同的模态MR和US之间)并不总是重叠,因为图像的像素强度范围大多重叠。方法:我们提出了类似领域适应的概念,其中我们在两种不同的模式(超声和MRI)之间转移机构间语言模型(上下文依赖和上下文独立)以捕获肝脏异常。结果:我们以肝细胞癌的MR和US筛查检查报告为例,应用迁移语言空间策略自动标记有和没有结构化模板的影像学检查,平均f1评分> 0.9。结论:我们得出的结论是,在执行共享目标任务时,迁移学习和微调判别模型通常比从头开始训练语言空间更有效。
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来源期刊
Journal of Biomedical Semantics
Journal of Biomedical Semantics MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
4.20
自引率
5.30%
发文量
28
审稿时长
30 weeks
期刊介绍: Journal of Biomedical Semantics addresses issues of semantic enrichment and semantic processing in the biomedical domain. The scope of the journal covers two main areas: Infrastructure for biomedical semantics: focusing on semantic resources and repositories, meta-data management and resource description, knowledge representation and semantic frameworks, the Biomedical Semantic Web, and semantic interoperability. Semantic mining, annotation, and analysis: focusing on approaches and applications of semantic resources; and tools for investigation, reasoning, prediction, and discoveries in biomedicine.
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