Polyhydroxyalkanoate accumulation in Streptomyces coelicolor affected by SCO7613 gene region.

Turkish journal of biology = Turk biyoloji dergisi Pub Date : 2021-06-23 eCollection Date: 2021-01-01 DOI:10.3906/biy-2011-16
Zeynep Demir Öksüz, Tuğrul Doruk, Nevin Yağci, Sedef Tunca Gedik
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Abstract

Polyhydroxyalkanoate (PHA) is stored as an important carbon and energy source in bacterial cells. For biomedical applications, gram-positive bacteria can be better sources of PHAs, since they lack outer membrane lipopolysaccharide. Although gram-positive Streptomyces coelicolor A3(2) has been indicated as a high potential PHA producer, pha C gene that encodes the key enzyme PHA synthase in the metabolic pathway is not determined in its genome. BLAST search results of the GenBank database argued that SCO7613 could specify a putative polyhydroxyalkanoate synthase (PhaC) responsible for PHA biosynthesis. Deduced amino acid sequence of SCO7613 showed the presence of conserved lipase box like sequence, 555GASAG559, in which serine residue was present as the active nucleophile. Present study describes deletion of putative S. coelicolor pha C gene via PCR dependent method. We showed that SCO7613 is not an essential gene in S. coelicolor and its deletion affected PHA accumulation negatively although it is not ceased. Transcomplementation abolished the mutant phenotype, demonstrating that the decrease in PHA resulted from the deletion of SCO7613.

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SCO7613基因区对冷色链霉菌聚羟基烷酸积累的影响
聚羟基烷酸酯(PHA)作为一种重要的碳和能量来源储存在细菌细胞中。对于生物医学应用,革兰氏阳性细菌可以作为pha的更好来源,因为它们缺乏外膜脂多糖。虽然革兰氏阳性的coelicolstreptomyces A3(2)已被认为是高潜力的PHA生产者,但在其基因组中尚未确定编码代谢途径中关键酶PHA合成酶的PHA C基因。GenBank数据库的BLAST搜索结果表明,SCO7613可以指定一种假定的PHA生物合成的聚羟基烷酸合成酶(PhaC)。推导出SCO7613的氨基酸序列,发现存在保守的脂肪酶盒状序列555GASAG559,其中丝氨酸残基作为活性亲核试剂存在。本研究通过PCR依赖的方法描述了推测的葡萄球菌pha C基因的缺失。我们发现SCO7613不是葡萄球菌的必需基因,它的缺失虽然没有停止,但对PHA的积累有负面影响。转互补消除了突变表型,表明PHA的减少是由于SCO7613的缺失造成的。
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