Graph Matching Based Connectomic Biomarker with Learning for Brain Disorders.

Rui Sherry Shen, Jacob A Alappatt, Drew Parker, Junghoon Kim, Ragini Verma, Yusuf Osmanlıoğlu
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Abstract

Advances in neuroimaging techniques such as diffusion MRI and functional MRI enabled evaluation of the brain as an information processing network that is called connectome. Connectomic analysis has led to numerous findings on the organization of the brain its pathological changes with diseases, providing imaging-based biomarkers that help in diagnosis and prognosis. A large majority of connectomic biomarkers benefit either from graph-theoretical measures that evaluate brain's network structure, or use standard metrics such as Euclidean distance or Pearson's correlation to show between-connectomes relations. However, such methods are limited in diagnostic evaluation of diseases, because they do not simultaneously measure the difference between individual connectomes, incorporate disease-specific patterns, and utilize network structure information. To address these limitations, we propose a graph matching based method to quantify connectomic similarity, which can be trained for diseases at functional systems level to provide a subject-specific biomarker assessing the disease. We validate our measure on a dataset of patients with traumatic brain injury and demonstrate that our measure achieves better separation between patients and controls compared to commonly used connectomic similarity measures. We further evaluate the vulnerability of the functional systems to the disease by utilizing the parameter tuning aspect of our method. We finally show that our similarity score correlates with clinical scores, highlighting its potential as a subject-specific biomarker for the disease.

基于图匹配的连接组生物标志物与脑疾病学习
弥散核磁共振成像(Diffusion MRI)和功能核磁共振成像(Functional MRI)等神经成像技术的进步使人们能够将大脑作为一个信息处理网络进行评估,这个网络被称为 "连接组"(connectome)。连通组分析带来了许多关于大脑组织和疾病病理变化的发现,提供了有助于诊断和预后的基于成像的生物标志物。大多数连接组生物标志物都得益于评估大脑网络结构的图论方法,或使用欧氏距离或皮尔逊相关性等标准指标来显示连接组之间的关系。然而,这些方法在疾病诊断评估方面存在局限性,因为它们不能同时测量单个连接体之间的差异、纳入疾病特异性模式和利用网络结构信息。为了解决这些局限性,我们提出了一种基于图匹配的方法来量化连接组相似性,这种方法可以在功能系统层面对疾病进行训练,从而提供评估疾病的特定生物标记。我们在脑外伤患者数据集上验证了我们的测量方法,并证明与常用的连接组相似性测量方法相比,我们的测量方法能更好地区分患者和对照组。通过利用我们方法的参数调整功能,我们进一步评估了功能系统对疾病的脆弱性。最后,我们还证明了我们的相似性得分与临床评分的相关性,从而凸显了其作为疾病的特异性生物标记物的潜力。
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