Joint modelling of longitudinal and survival data in the presence of competing risks with applications to prostate cancer data.

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Accounts of Chemical Research Pub Date : 2021-02-01 Epub Date: 2020-09-25 DOI:10.1177/1471082X20944620
Md Tuhin Sheikh, Joseph G Ibrahim, Jonathan A Gelfond, Wei Sun, Ming-Hui Chen
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引用次数: 0

Abstract

This research is motivated from the data from a large Selenium and Vitamin E Cancer Prevention Trial (SELECT). The prostate specific antigens (PSAs) were collected longitudinally, and the survival endpoint was the time to low-grade cancer or the time to high-grade cancer (competing risks). In this article, the goal is to model the longitudinal PSA data and the time-to-prostate cancer (PC) due to low- or high-grade. We consider the low-grade and high-grade as two competing causes of developing PC. A joint model for simultaneously analysing longitudinal and time-to-event data in the presence of multiple causes of failure (or competing risk) is proposed within the Bayesian framework. The proposed model allows for handling the missing causes of failure in the SELECT data and implementing an efficient Markov chain Monte Carlo sampling algorithm to sample from the posterior distribution via a novel reparameterization technique. Bayesian criteria, ΔDICSurv, and ΔWAICSurv, are introduced to quantify the gain in fit in the survival sub-model due to the inclusion of longitudinal data. A simulation study is conducted to examine the empirical performance of the posterior estimates as well as ΔDICSurv and ΔWAICSurv and a detailed analysis of the SELECT data is also carried out to further demonstrate the proposed methodology.

在存在竞争风险的情况下对纵向数据和生存数据进行联合建模,并应用于前列腺癌数据。
这项研究的灵感来自于一项大型硒和维生素 E 癌症预防试验(SELECT)的数据。该试验纵向收集了前列腺特异性抗原(PSA)数据,生存终点是低级别癌症发生时间或高级别癌症发生时间(竞争风险)。本文的目标是对纵向 PSA 数据以及低级别或高级别前列腺癌(PC)的发生时间进行建模。我们将低分化和高分化视为导致前列腺癌的两个相互竞争的原因。我们在贝叶斯框架内提出了一个联合模型,用于在存在多种失败原因(或竞争风险)的情况下同时分析纵向数据和时间到事件数据。所提出的模型可以处理 SELECT 数据中缺失的故障原因,并通过一种新颖的重参数化技术实施高效的马尔科夫链蒙特卡罗采样算法,从后验分布中进行采样。引入贝叶斯标准 ΔDICSurv 和 ΔWAICSurv 来量化由于纳入纵向数据而在生存子模型中获得的拟合收益。为了检验后验估计值以及 ΔDICSurv 和 ΔWAICSurv 的经验性能,我们进行了模拟研究,并对 SELECT 数据进行了详细分析,以进一步证明所建议的方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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