Discovering mycobacterial lectins as potential drug targets and vaccine candidates for tuberculosis treatment: a theoretical approach.

Journal of proteins and proteomics Pub Date : 2021-01-01 Epub Date: 2021-05-18 DOI:10.1007/s42485-021-00065-y
Shobana Sundar, Lokesh Thangamani, Shanmughavel Piramanayagam, Jeyakumar Natarajan
{"title":"Discovering mycobacterial lectins as potential drug targets and vaccine candidates for tuberculosis treatment: a theoretical approach.","authors":"Shobana Sundar,&nbsp;Lokesh Thangamani,&nbsp;Shanmughavel Piramanayagam,&nbsp;Jeyakumar Natarajan","doi":"10.1007/s42485-021-00065-y","DOIUrl":null,"url":null,"abstract":"<p><p><i>M. tuberculosis</i> proliferates within the macrophages during infection and they are bounded by carbohydrates in the cell wall, called lectins. Despite their surface localization, the studies on exact functions of lectins are unexplored. Hence, in our study, using insilico approaches, 11 potential lectins of Mtb was explored as potential drug targets and vaccine candidates<i>.</i> Initially, a gene interaction network was constructed for the 11 potential lectins and identified its functional partners. A gene ontology analysis was also performed for the 11 mycobacterial lectins along with its functional partners and found most of the proteins are present in the extracellular region of the bacterium and belongs to the PE/PPE family of proteins. Further, molecular docking studies were performed for two of the potential lectins (Rv2075c and Rv1917c). A novel series of quinoxalinone and fucoidan derivatives have been made to dock against these selected lectins. Molecular docking study reveals that quinoxalinone derivatives showed better affinity against Rv2075c, whereas fucoidan derivatives have good binding affinity against Rv1917c. Moreover, the mycobacterial lectins can interact with the host and they are considered as potential vaccine candidates. Hence, immunoinformatics study was carried out for all the 11 potential lectins. B-cell and T-cell binding epitopes were predicted using insilico tools. Further, an immunodominant epitope <sup>1062</sup>SIPAIPLSVEV<sup>1072</sup> of Rv1917c was identified, which was predicted to bind B-cell and most of the MHC alleles. Thus, the study has explored that mycobacterial lectins could be potentially used as drug targets and vaccine candidates for tuberculosis treatment.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s42485-021-00065-y.</p>","PeriodicalId":73910,"journal":{"name":"Journal of proteins and proteomics","volume":"12 2","pages":"93-104"},"PeriodicalIF":0.0000,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s42485-021-00065-y","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of proteins and proteomics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1007/s42485-021-00065-y","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2021/5/18 0:00:00","PubModel":"Epub","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

M. tuberculosis proliferates within the macrophages during infection and they are bounded by carbohydrates in the cell wall, called lectins. Despite their surface localization, the studies on exact functions of lectins are unexplored. Hence, in our study, using insilico approaches, 11 potential lectins of Mtb was explored as potential drug targets and vaccine candidates. Initially, a gene interaction network was constructed for the 11 potential lectins and identified its functional partners. A gene ontology analysis was also performed for the 11 mycobacterial lectins along with its functional partners and found most of the proteins are present in the extracellular region of the bacterium and belongs to the PE/PPE family of proteins. Further, molecular docking studies were performed for two of the potential lectins (Rv2075c and Rv1917c). A novel series of quinoxalinone and fucoidan derivatives have been made to dock against these selected lectins. Molecular docking study reveals that quinoxalinone derivatives showed better affinity against Rv2075c, whereas fucoidan derivatives have good binding affinity against Rv1917c. Moreover, the mycobacterial lectins can interact with the host and they are considered as potential vaccine candidates. Hence, immunoinformatics study was carried out for all the 11 potential lectins. B-cell and T-cell binding epitopes were predicted using insilico tools. Further, an immunodominant epitope 1062SIPAIPLSVEV1072 of Rv1917c was identified, which was predicted to bind B-cell and most of the MHC alleles. Thus, the study has explored that mycobacterial lectins could be potentially used as drug targets and vaccine candidates for tuberculosis treatment.

Supplementary information: The online version contains supplementary material available at 10.1007/s42485-021-00065-y.

Abstract Image

Abstract Image

Abstract Image

发现分枝杆菌凝集素作为结核病治疗的潜在药物靶点和候选疫苗:一种理论方法。
结核分枝杆菌在感染期间在巨噬细胞内增殖,它们被细胞壁中的碳水化合物(称为凝集素)所束缚。尽管凝集素的表面定位,但对其确切功能的研究尚未深入。因此,在我们的研究中,使用计算机方法,探索了11种潜在的Mtb凝集素作为潜在的药物靶点和候选疫苗。首先,构建了11种潜在凝集素的基因相互作用网络,并确定了其功能伙伴。对这11种分枝杆菌凝集素及其功能伙伴进行了基因本体分析,发现大多数蛋白质存在于该细菌的细胞外区域,属于PE/PPE蛋白家族。进一步,对两种潜在凝集素(Rv2075c和Rv1917c)进行了分子对接研究。一系列新的喹诺沙林酮和岩藻糖聚糖衍生物已被制成对接这些选定的凝集素。分子对接研究表明,喹诺沙林酮衍生物对Rv2075c具有较好的亲和力,岩藻糖聚糖衍生物对Rv1917c具有较好的结合亲和力。此外,分枝杆菌凝集素可以与宿主相互作用,它们被认为是潜在的候选疫苗。因此,对所有11种潜在凝集素进行免疫信息学研究。使用计算机工具预测b细胞和t细胞结合表位。此外,还鉴定出Rv1917c的免疫优势表位1062SIPAIPLSVEV1072,预计该表位可结合b细胞和大多数MHC等位基因。因此,该研究探索了分枝杆菌凝集素可能潜在地用作结核病治疗的药物靶点和候选疫苗。补充信息:在线版本包含补充信息,获取地址:10.1007/s42485-021-00065-y。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信