Frequency of heavy vehicle traffic and association with DNA methylation at age 18 years in a subset of the Isle of Wight birth cohort.

IF 4.8 Q1 GENETICS & HEREDITY
A Commodore, N Mukherjee, D Chung, E Svendsen, J Vena, J Pearce, J Roberts, S H Arshad, W Karmaus
{"title":"Frequency of heavy vehicle traffic and association with DNA methylation at age 18 years in a subset of the Isle of Wight birth cohort.","authors":"A Commodore,&nbsp;N Mukherjee,&nbsp;D Chung,&nbsp;E Svendsen,&nbsp;J Vena,&nbsp;J Pearce,&nbsp;J Roberts,&nbsp;S H Arshad,&nbsp;W Karmaus","doi":"10.1093/eep/dvy028","DOIUrl":null,"url":null,"abstract":"<p><p>Assessment of changes in DNA methylation (DNA-m) has the potential to identify adverse environmental exposures. To examine DNA-m among a subset of participants (<i>n</i> = 369) in the Isle of Wight birth cohort who reported variable near resident traffic frequencies. We used self-reported frequencies of heavy vehicles passing by the homes of study subjects as a proxy measure for TRAP, which were: never, seldom, 10 per day, 1-9 per hour and >10 per hour. Methylation of cytosine-phosphate-guanine (CpG) dinucleotide sequences in the DNA was assessed from blood samples collected at age 18 years (<i>n</i> = 369) in the F1 generation. We conducted an epigenome wide association study to examine CpGs related to the frequency of heavy vehicles passing by subjects' homes, and employed multiple linear regression models to assess potential associations. We repeated some of these analysis in the F2 generation (<i>n</i> = 140). Thirty-five CpG sites were associated with heavy vehicular traffic. After adjusting for confounders, we found 23 CpGs that were more methylated, and 11 CpGs that were less methylated with increasing heavy vehicular traffic frequency among all subjects. In the F2 generation, 2 of 31 CpGs were associated with traffic frequencies and the direction of the effect was the same as in the F1 subset while differential methylation of 7 of 31 CpG sites correlated with gene expression. Our findings reveal differences in DNA-m in participants who reported higher heavy vehicular traffic frequencies when compared to participants who reported lower frequencies.</p>","PeriodicalId":11774,"journal":{"name":"Environmental Epigenetics","volume":"4 4","pages":"dvy028"},"PeriodicalIF":4.8000,"publicationDate":"2019-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1093/eep/dvy028","citationCount":"6","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Environmental Epigenetics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1093/eep/dvy028","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 6

Abstract

Assessment of changes in DNA methylation (DNA-m) has the potential to identify adverse environmental exposures. To examine DNA-m among a subset of participants (n = 369) in the Isle of Wight birth cohort who reported variable near resident traffic frequencies. We used self-reported frequencies of heavy vehicles passing by the homes of study subjects as a proxy measure for TRAP, which were: never, seldom, 10 per day, 1-9 per hour and >10 per hour. Methylation of cytosine-phosphate-guanine (CpG) dinucleotide sequences in the DNA was assessed from blood samples collected at age 18 years (n = 369) in the F1 generation. We conducted an epigenome wide association study to examine CpGs related to the frequency of heavy vehicles passing by subjects' homes, and employed multiple linear regression models to assess potential associations. We repeated some of these analysis in the F2 generation (n = 140). Thirty-five CpG sites were associated with heavy vehicular traffic. After adjusting for confounders, we found 23 CpGs that were more methylated, and 11 CpGs that were less methylated with increasing heavy vehicular traffic frequency among all subjects. In the F2 generation, 2 of 31 CpGs were associated with traffic frequencies and the direction of the effect was the same as in the F1 subset while differential methylation of 7 of 31 CpG sites correlated with gene expression. Our findings reveal differences in DNA-m in participants who reported higher heavy vehicular traffic frequencies when compared to participants who reported lower frequencies.

Abstract Image

Abstract Image

怀特岛出生队列中18岁时重型车辆交通的频率和与DNA甲基化的相关性。
评估DNA甲基化(DNA-m)的变化有可能确定不良环境暴露。为了在参与者(n = 369),他们报告了可变的近居民交通频率。我们使用重型车辆经过研究对象家中的自我报告频率作为TRAP的替代指标,这些频率为:从不、很少、每天10次、每小时1-9次和每小时>10次。从18岁时采集的血液样本中评估DNA中胞嘧啶磷酸鸟嘌呤(CpG)二核苷酸序列的甲基化 年(n = 369)。我们进行了一项表观基因组范围的关联研究,以检查与重型车辆经过受试者家的频率相关的CpG,并使用多元线性回归模型来评估潜在的关联。我们在F2代(n = 140)。35个CpG站点与繁忙的车辆交通有关。在调整混杂因素后,我们发现在所有受试者中,随着重型车辆交通频率的增加,23个CpG的甲基化程度较高,11个CpG甲基化程度较低。在F2代中,31个CpG中的2个与交通频率相关,作用方向与F1亚群相同,而31个CpG位点中的7个的差异甲基化与基因表达相关。我们的研究结果显示,与报告较低频率的参与者相比,报告较高重型车辆交通频率的参与者的DNA-m存在差异。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Environmental Epigenetics
Environmental Epigenetics GENETICS & HEREDITY-
CiteScore
6.50
自引率
5.30%
发文量
0
审稿时长
17 weeks
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信