De novo male gonad transcriptome draft for the marine mussel Perumytilus purpuratus with a focus on its reproductive-related proteins.

Journal of Genomics Pub Date : 2018-11-16 eCollection Date: 2018-01-01 DOI:10.7150/jgen.27864
Carolina Briones, José J Nuñez, Montse Pérez, Daniela Espinoza-Rojas, Cristian Molina-Quiroz, Ricardo Guiñez
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引用次数: 11

Abstract

Perumytilus purpuratus is a marine mussel considered a bioengineer species with a broad distribution in the Pacific and Atlantic coast of South America. Studies have shown two geographically and genetically differentiated subpopulations at molecular level and in sperm morphological traits. To open avenues for molecular research on P. purpuratus, a global de novo transcriptome from gonadal tissue of mature males was sequenced using the Illumina platform. From a total of 126.38 million reads, 37,765 transcripts were successfully annotated. BUSCO analysis determined a level of 89% completeness for the assembled transcriptome. The functional gene ontology (GO) annotation indicated that, in terms of abundance, the transcripts related with molecular function were the most represented, followed by those related with biological process and cellular components. Additionally, a subset of GO annotations generated using the "sperm" term resulted in a total of 1,294 sequences where the biological process category was the more represented, with transcripts strongly associated to sperm-processes required for fertilization, and with processes where the sperm-egg interaction could be implicated. Our work will contribute to the evolutionary understanding of the molecular mechanisms related to tissue-specific functions. This work reports the first male gonad transcriptome for the mussel P. purpuratus, generating a useful transcriptomic resource for this species and other closely related mytilids.

Abstract Image

Abstract Image

紫贻贝(Perumytilus purpuratus)雄性生殖腺从头转录组草图,重点研究其生殖相关蛋白。
紫贻贝(Perumytilus purpuratus)是一种被认为是生物工程物种的海洋贻贝,广泛分布于南美洲太平洋和大西洋沿岸。研究表明,在分子水平和精子形态特征上存在两个地理上和遗传上的分化亚群。利用Illumina平台对来自成熟雄性性腺组织的全球从头转录组进行测序,为紫癜性假单胞虫的分子研究开辟道路。在总共12638万条reads中,37765个转录本被成功标注。BUSCO分析确定组装转录组的完整性水平为89%。功能基因本体(functional gene ontology, GO)注释显示,从丰度来看,与分子功能相关的转录本最多,其次是与生物过程和细胞成分相关的转录本。此外,使用“精子”术语生成的GO注释子集产生了总共1294个序列,其中生物过程类别更有代表性,转录本与受精所需的精子过程密切相关,与精子-卵子相互作用可能涉及的过程密切相关。我们的工作将有助于对与组织特异性功能相关的分子机制的进化理解。本工作报道了紫花贻贝的第一个雄性性腺转录组,为该物种和其他密切相关的贻贝提供了有用的转录组资源。
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来源期刊
自引率
0.00%
发文量
11
审稿时长
12 weeks
期刊介绍: Journal of Genomics publishes papers of high quality in all areas of gene, genetics, genomics, proteomics, metabolomics, DNA/RNA, computational biology, bioinformatics, and other relevant areas of research and application. Articles published by the journal are rigorously peer-reviewed. Types of articles include: Research paper, Short research communication, Review or mini-reviews, Commentary, Database, Software.
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