Complete genome sequence of Planococcus sp. PAMC21323 isolated from Antarctica and its metabolic potential to detoxify pollutants.

Q3 Biochemistry, Genetics and Molecular Biology

Standards in Genomic Sciences Pub Date : 2018-11-09 eCollection Date: 2018-01-01 DOI:10.1186/s40793-018-0334-y

Jong-Hyun Jung, Min-Ho Joe, Dong-Ho Kim, Hyun Park, Jong-Il Choi, Sangyong Lim

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Abstract

The Planococcus sp. PAMC21323 is a yellow pigment-producing bacterium isolated from King George Island in Antarctica; it has a broad growth temperature range of 5-40 °C. Herein, we describe the complete genome sequence information of the genus Planococcus with its annotated sequence, genetic features for bioremediation, and oxidative stress capacity. The Planococcus sp. PAMC21323 possesses chromosomal DNA (3,196,500-bp) with plasmid DNA (3364-bp). The complete 3,199,864-bp of the genome consists of 3171 genes including 60 transfer RNAs and 24 ribosomal RNAs. Strain PAMC21323 encodes various genes associated with detoxification of heavy metal ions and aromatic hydrocarbons. Moreover, it is equipped with diverse stress response systems, which can be used to sense the internal and oxidative stresses caused by detoxification. This is the first report highlighting the genetic potential of Planococcus sp. PAMC21323 in bioremediation, suggesting application of this psychrotrophic strain in bioremediation in harsh environments.

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从南极洲分离的 Planococcus sp.

Planococcus sp. PAMC21323 是一种产黄色素的细菌，从南极洲乔治王岛分离出来；它的生长温度范围很广，为 5-40 °C。在此，我们介绍了 Planococcus 属的完整基因组序列信息及其注释序列、生物修复遗传特征和氧化应激能力。Planococcus sp. PAMC21323具有染色体DNA（3,196,500-bp）和质粒DNA（3364-bp）。完整的 3,199,864-bp 基因组由 3171 个基因组成，其中包括 60 个转移 RNA 和 24 个核糖体 RNA。菌株 PAMC21323 编码多种与重金属离子和芳香烃解毒相关的基因。此外，它还具有多种应激反应系统，可用于感知解毒过程中产生的内部和氧化应激。这是第一份强调 Planococcus sp. PAMC21323 在生物修复方面的遗传潜力的报告，建议将这种精神滋养型菌株应用于恶劣环境下的生物修复。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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