Automating Installation of the Integrating Biology and the Bedside (i2b2) Platform.

Biomedical informatics insights Pub Date : 2018-06-04 eCollection Date: 2018-01-01 DOI:10.1177/1178222618777749

Kavishwar B Wagholikar, Michael Mendis, Pralav Dessai, Javier Sanz, Sindy Law, Micheal Gilson, Stephan Sanders, Mahesh Vangala, Douglas S Bell, Shawn N Murphy

{"title":"Automating Installation of the Integrating Biology and the Bedside (i2b2) Platform.","authors":"Kavishwar B Wagholikar, Michael Mendis, Pralav Dessai, Javier Sanz, Sindy Law, Micheal Gilson, Stephan Sanders, Mahesh Vangala, Douglas S Bell, Shawn N Murphy","doi":"10.1177/1178222618777749","DOIUrl":null,"url":null,"abstract":"<p><p>Informatics for Integrating Biology and the Bedside (i2b2) is an open source clinical data analytics platform used at more than 150 institutions for querying patient data. An i2b2 installation (called hive) comprises several i2b2 cells that provide different functionalities. Given the complex architecture of i2b2 installation, creating a working installation of the platform is challenging for new users. This is despite the availability of extensive documentation for i2b2 and access to a large and active mailing list community of i2b2 users. To address this problem, we have created an automated installation package, called i2b2-quickstart, which automatically downloads the latest i2b2 source code and dependencies, and compiles and configures the i2b2 cells to create a functional i2b2 hive installation. This package will serve as a convenient starting point and reference implementation that will facilitate researchers in the installation and exploration of the i2b2 platform.</p>","PeriodicalId":88397,"journal":{"name":"Biomedical informatics insights","volume":"10 ","pages":"1178222618777749"},"PeriodicalIF":0.0000,"publicationDate":"2018-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1177/1178222618777749","citationCount":"6","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biomedical informatics insights","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1177/1178222618777749","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2018/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}

引用次数: 6

Abstract

Informatics for Integrating Biology and the Bedside (i2b2) is an open source clinical data analytics platform used at more than 150 institutions for querying patient data. An i2b2 installation (called hive) comprises several i2b2 cells that provide different functionalities. Given the complex architecture of i2b2 installation, creating a working installation of the platform is challenging for new users. This is despite the availability of extensive documentation for i2b2 and access to a large and active mailing list community of i2b2 users. To address this problem, we have created an automated installation package, called i2b2-quickstart, which automatically downloads the latest i2b2 source code and dependencies, and compiles and configures the i2b2 cells to create a functional i2b2 hive installation. This package will serve as a convenient starting point and reference implementation that will facilitate researchers in the installation and exploration of the i2b2 platform.

Abstract Image

查看原文本刊更多论文

集成生物学和床边(i2b2)平台的自动化安装。

信息学集成生物学和床边(i2b2)是一个开源临床数据分析平台，用于150多家机构查询患者数据。i2b2安装(称为hive)包含几个提供不同功能的i2b2单元。考虑到i2b2安装的复杂体系结构，创建平台的工作安装对于新用户来说是一个挑战。尽管有大量关于i2b2的文档，并且有大量活跃的i2b2用户邮件列表社区。为了解决这个问题，我们创建了一个名为i2b2-quickstart的自动安装包，它会自动下载最新的i2b2源代码和依赖项，并编译和配置i2b2单元，以创建一个功能性的i2b2 hive安装。这个包将作为一个方便的起点和参考实现，方便研究人员安装和探索i2b2平台。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

求助全文

约1分钟内获得全文求助全文

来源期刊

Biomedical informatics insights

自引率

0.00%

发文量