Draft genome of Paraburkholderia caballeronis TNe-841^T, a free-living, nitrogen-fixing, tomato plant-associated bacterium.

Q3 Biochemistry, Genetics and Molecular Biology

Standards in Genomic Sciences Pub Date : 2017-12-16 eCollection Date: 2017-01-01 DOI:10.1186/s40793-017-0294-7

Fernando Uriel Rojas-Rojas, Erika Yanet Tapia-García, Maskit Maymon, Ethan Humm, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, T B K Reddy, Victor Markowitz, Natalia Ivanova, Nikos Kyrpides, Tanja Woyke, Nicole Shapiro, Ann M Hirsch, Paulina Estrada-de Los Santos

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引用次数: 8

Abstract

10.1601/nm.26956 caballeronis is a plant-associated bacterium. Strain TNe-841^T was isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was found to effectively nodulate Phaseolus vulgaris L. However, from an analysis of the genome of strain TNe-841^T and from repeat inoculation experiments, we found that this strain did not nodulate bean and also lacked nodulation genes, suggesting that the genes were lost. The genome consists of 7,115,141 bp with a G + C content of 67.01%. The sequence includes 6251 protein-coding genes and 87 RNA genes.

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拟拟caballeronparaburkholderia TNe-841T的基因组，这是一种自由生活的、固氮的、与番茄植物相关的细菌。

10.1601 / nm。26956 caballeronis是一种与植物有关的细菌。菌株ne - 841t是从生长在墨西哥Nepantla的番茄根际分离得到的。最初发现该细菌能有效地结瘤菜豆，但通过对菌株ne - 841t的基因组分析和重复接种实验，我们发现该菌株不能结瘤，也缺乏结瘤基因，表明这些基因丢失了。基因组全长7115,141 bp, G + C含量为67.01%。该序列包含6251个蛋白质编码基因和87个RNA基因。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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