High-quality-draft genomic sequence of Paenibacillus ferrarius CY1T with the potential to bioremediate Cd, Cr and Se contamination.

Q3 Biochemistry, Genetics and Molecular Biology
Standards in Genomic Sciences Pub Date : 2017-10-10 eCollection Date: 2017-01-01 DOI:10.1186/s40793-017-0273-z
Jingxin Li, Wei Guo, Manman Shi, Yajing Cao, Gejiao Wang
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引用次数: 4

Abstract

Paenibacillus ferrarius CY1T (= KCTC 33419T = CCTCC AB2013369T) is a Gram-positive, aerobic, endospore-forming, motile and rod-shaped bacterium isolated from iron mineral soil. This bacterium reduces sulfate (SO42-) to S2-, which reacts with Cd(II) to generate precipitated CdS. It also reduces the toxic chromate [Cr(VI)] and selenite [Se(VI)] to the less bioavailable chromite [Cr(III)] and selenium (Se0), respectively. Thus, strain CY1T has the potential to bioremediate Cd, Cr and Se contamination, which is the main reason for the interest in sequencing its genome. Here we describe the features of strain CY1T, together with the draft genome sequence and its annotation. The 9,184,169 bp long genome exhibits a G + C content of 45.6%, 7909 protein-coding genes and 81 RNA genes. Nine putative Se(IV)-reducing genes, five putative Cr(VI) reductase and nine putative sulfate-reducing genes were identified in the genome.

Abstract Image

Abstract Image

Abstract Image

具有生物修复Cd, Cr和Se污染潜力的ferferarius Paenibacillus CY1T的高质量基因组序列草图。
ferferarius Paenibacillus CY1T (= KCTC 33419T = CCTCC AB2013369T)是一种从含铁矿物土壤中分离出来的革兰氏阳性、需氧、芽孢内形成、可运动的棒状细菌。这种细菌将硫酸盐(SO42-)还原为S2-, S2-与Cd(II)反应生成沉淀的Cd。它还将有毒的铬酸盐[Cr(VI)]和亚硒酸盐[Se(VI)]分别还原为生物利用度较低的铬铁矿[Cr(III)]和硒(Se0)。因此,菌株CY1T具有生物修复Cd, Cr和Se污染的潜力,这是对其基因组测序感兴趣的主要原因。本文描述了菌株CY1T的特征,以及基因组序列草图和注释。基因组全长9,184,169 bp, G + C含量为45.6%,蛋白编码基因7909个,RNA基因81个。在基因组中鉴定出9个Se(IV)还原基因、5个Cr(VI)还原酶和9个硫酸盐还原基因。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Standards in Genomic Sciences
Standards in Genomic Sciences GENETICS & HEREDITY-MICROBIOLOGY
CiteScore
1.44
自引率
0.00%
发文量
0
审稿时长
6-12 weeks
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