Complete genome of Arthrobacter alpinus strain R3.8, bioremediation potential unraveled with genomic analysis.

Q3 Biochemistry, Genetics and Molecular Biology
Standards in Genomic Sciences Pub Date : 2017-09-06 eCollection Date: 2017-01-01 DOI:10.1186/s40793-017-0264-0
Wah-Seng See-Too, Robson Ee, Yan-Lue Lim, Peter Convey, David A Pearce, Taznim Begam Mohd Mohidin, Wai-Fong Yin, Kok Gan Chan
{"title":"Complete genome of <i>Arthrobacter alpinus</i> strain R3.8, bioremediation potential unraveled with genomic analysis.","authors":"Wah-Seng See-Too,&nbsp;Robson Ee,&nbsp;Yan-Lue Lim,&nbsp;Peter Convey,&nbsp;David A Pearce,&nbsp;Taznim Begam Mohd Mohidin,&nbsp;Wai-Fong Yin,&nbsp;Kok Gan Chan","doi":"10.1186/s40793-017-0264-0","DOIUrl":null,"url":null,"abstract":"<p><p><i>Arthrobacter alpinus</i> R3.8 is a psychrotolerant bacterial strain isolated from a soil sample obtained at Rothera Point, Adelaide Island, close to the Antarctic Peninsula. Strain R3.8 was sequenced in order to help discover potential cold active enzymes with biotechnological applications. Genome analysis identified various cold adaptation genes including some coding for anti-freeze proteins and cold-shock proteins, genes involved in bioremediation of xenobiotic compounds including naphthalene, and genes with chitinolytic and <i>N</i>-acetylglucosamine utilization properties and also plant-growth-influencing properties. In this genome report, we present a complete genome sequence of <i>A. alpinus</i> strain R3.8 and its annotation data, which will facilitate exploitation of potential novel cold-active enzymes.</p>","PeriodicalId":21965,"journal":{"name":"Standards in Genomic Sciences","volume":"12 ","pages":"52"},"PeriodicalIF":0.0000,"publicationDate":"2017-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40793-017-0264-0","citationCount":"12","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Standards in Genomic Sciences","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s40793-017-0264-0","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2017/1/1 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 12

Abstract

Arthrobacter alpinus R3.8 is a psychrotolerant bacterial strain isolated from a soil sample obtained at Rothera Point, Adelaide Island, close to the Antarctic Peninsula. Strain R3.8 was sequenced in order to help discover potential cold active enzymes with biotechnological applications. Genome analysis identified various cold adaptation genes including some coding for anti-freeze proteins and cold-shock proteins, genes involved in bioremediation of xenobiotic compounds including naphthalene, and genes with chitinolytic and N-acetylglucosamine utilization properties and also plant-growth-influencing properties. In this genome report, we present a complete genome sequence of A. alpinus strain R3.8 and its annotation data, which will facilitate exploitation of potential novel cold-active enzymes.

Abstract Image

Abstract Image

Abstract Image

高山节杆菌R3.8全基因组,基因组分析揭示生物修复潜力。
高山节杆菌R3.8是从靠近南极半岛的阿德莱德岛Rothera Point获得的土壤样本中分离出的一种耐寒细菌菌株。对菌株R3.8进行测序,发现具有潜在生物技术应用价值的冷活性酶。基因组分析发现了多种冷适应基因,包括一些编码抗冻蛋白和冷休克蛋白的基因,参与萘等外源化合物生物修复的基因,以及具有几丁质溶解和n -乙酰氨基葡萄糖利用特性的基因,以及影响植物生长的基因。在这篇基因组报告中,我们提出了a . alpinus菌株R3.8的完整基因组序列及其注释数据,这将有助于开发潜在的新型冷活性酶。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Standards in Genomic Sciences
Standards in Genomic Sciences GENETICS & HEREDITY-MICROBIOLOGY
CiteScore
1.44
自引率
0.00%
发文量
0
审稿时长
6-12 weeks
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信