First draft genome sequence of a strain from the genus Fusibacter isolated from Salar de Ascotán in Northern Chile.

Q3 Biochemistry, Genetics and Molecular Biology
Standards in Genomic Sciences Pub Date : 2017-07-24 eCollection Date: 2017-01-01 DOI:10.1186/s40793-017-0252-4
Antonio E Serrano, Lorena V Escudero, Cinthya Tebes-Cayo, Mauricio Acosta, Olga Encalada, Sebastián Fernández-Moroso, Cecilia Demergasso
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引用次数: 23

Abstract

Fusibacter sp. 3D3 (ATCC BAA-2418) is an arsenate-reducing halotolerant strain within the Firmicutes phylum, isolated from the Salar de Ascotán, a hypersaline salt flat in Northern Chile. This high-Andean closed basin is an athalassohaline environment located at the bottom of a tectonic basin surrounded by mountain range, including some active volcanoes. This landscape can be an advantageous system to explore the effect of salinity on microorganisms that mediate biogeochemical reactions. Since 2000, microbial reduction of arsenic has been evidenced in the system, and the phylogenetic analysis of the original community plus the culture enrichments has revealed the predominance of Firmicutes phylum. Here, we describe the first whole draft genome sequence of an arsenic-reducing strain belonging to the Fusibacter genus showing the highest 16S rRNA gene sequence similarity (98%) with Fusibacter sp. strain Vns02. The draft genome consists of 57 contigs with 5,111,250 bp and an average G + C content of 37.6%. Out of 4780 total genes predicted, 4700 genes code for proteins and 80 genes for RNAs. Insights from the genome sequence and some microbiological features of the strain 3D3 are available under Bioproject accession PRJDB4973 and Biosample SAMD00055724. The release of the genome sequence of this strain could contribute to the understanding of the arsenic biogeochemistry in extreme environments.

Abstract Image

Abstract Image

Abstract Image

从智利北部Ascotán盐湖分离的fususibacter属菌株的基因组序列初稿。
Fusibacter sp. 3D3 (ATCC BAA-2418)是厚壁菌门中的一种砷酸还原耐盐菌株,从智利北部的高盐盐沼Ascotán中分离出来。这个高安第斯山脉封闭盆地是一个位于构造盆地底部的阿塔拉索盐环境,周围有山脉,包括一些活火山。这种景观可以成为探索盐度对介导生物地球化学反应的微生物影响的有利系统。自2000年以来,该系统已证实微生物对砷的还原作用,并且对原始群落和培养富集物的系统发育分析显示厚壁菌门的优势。在这里,我们描述了属于fususibacter属的砷还原菌株的第一个全基因组序列草图,该菌株与fususibacter sp.菌株Vns02的16S rRNA基因序列相似性最高(98%)。基因组草图由57个contigs组成,5111,250 bp,平均G + C含量为37.6%。在预测的4780个基因中,4700个基因编码蛋白质,80个基因编码rna。菌株3D3的基因组序列和一些微生物学特征的信息可在Bioproject登录PRJDB4973和Biosample SAMD00055724下获得。该菌株基因组序列的释放有助于对极端环境下砷生物地球化学的认识。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Standards in Genomic Sciences
Standards in Genomic Sciences GENETICS & HEREDITY-MICROBIOLOGY
CiteScore
1.44
自引率
0.00%
发文量
0
审稿时长
6-12 weeks
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