Transcriptome of barley under three different heavy metal stress reaction

Martina Kintlová , Nicolas Blavet , Radim Cegan , Roman Hobza
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引用次数: 23

Abstract

In the present study, we used Illumina sequencing technology (HiSeq 2000) to sequence the transcriptome of barley (Hordeum vulgare L., cv. Morex) under three different heavy metal stress conditions: copper, zinc and cadmium. For each of those metals, the concentration causing a 50% inhibitory effect for root growth (EC50) was determined. We sequenced the total RNA of both roots and shoots from barley with and without heavy metal treatments in three replicates. Raw reads of the transcriptome project have been deposited in NCBI's BioProject accession number PRJNA382490. The obtained transcriptomic data will be useful for further studies focusing on heavy metal tolerance and comparative transcriptome analysis in barley.

三种不同重金属胁迫下大麦转录组的研究
在本研究中,我们使用Illumina测序技术(HiSeq 2000)对大麦(Hordeum vulgare L., cv.)的转录组进行测序。Morex)在铜、锌和镉三种不同的重金属胁迫条件下。测定了每种金属对根生长产生50%抑制作用的浓度(EC50)。我们在三个重复中对大麦进行了重金属处理和不重金属处理的根和芽的总RNA测序。转录组项目的原始reads已保存在NCBI的BioProject登录号PRJNA382490中。获得的转录组数据将为进一步研究大麦的重金属耐受性和比较转录组分析提供参考。
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