Identification and Preliminary Validation of Radiation Response Protein(s) in Human Blood for a High-throughput Molecular Biodosimetry Technology for the Future.

Q4 Biochemistry, Genetics and Molecular Biology
Genome Integrity Pub Date : 2017-01-23 eCollection Date: 2017-01-01 DOI:10.4103/2041-9414.198910
Saibadaiahun Nongrum, S Thangminlal Vaiphei, Joshua Keppen, Mandahakani Ksoo, Ettrika Kashyap, Rajesh N Sharan
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引用次数: 6

Abstract

The absence of a rapid and high-throughput technology for radiation biodosimetry has been a great obstacle in our full preparedness to cope with large-scale radiological incidents. The existing cytogenetic technologies have limitations, primarily due to their time-consuming methodologies, which include a tissue culture step, and the time required for scoring. This has seriously undermined its application in a mass casualty scenario under radiological emergencies for timely triage and medical interventions. Recent advances in genomics and proteomics in the postgenomic era have opened up new platforms and avenues to discover molecular biomarkers for biodosimetry in the future. Using a genomic-to-proteomic approach, we have identified a basket of twenty "candidate" radiation response genes (RRGs) using DNA microarray and tools of bioinformatics immediately after ex vivo irradiation of freshly drawn whole blood of consenting and healthy human volunteers. The candidate RRGs have partially been validated using real-time quantitative polymerase chain reaction (RT-qPCR or qPCR) to identify potential "candidate" RRGs at mRNA level. Two potential RRGs, CDNK1A and ZNF440, have so far been identified as genes with potentials to form radiation response proteins in liquid biopsy of blood, which shall eventually form the basis of fluorescence- or ELISA-based quantitative immunoprobe assay for a high-throughput technology of molecular biodosimetry in the future. More work is continuing.

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人类血液中辐射反应蛋白的鉴定和初步验证,为未来的高通量分子生物剂量测定技术奠定基础。
缺乏一种快速和高通量的辐射生物剂量测定技术一直是我们充分准备应对大规模辐射事件的一大障碍。现有的细胞遗传学技术存在局限性,主要是由于它们的方法耗时,包括组织培养步骤,以及评分所需的时间。这严重损害了它在放射紧急情况下大规模伤亡情况下的应用,无法及时进行分类和医疗干预。后基因组时代基因组学和蛋白质组学的最新进展为未来发现生物剂量测定的分子生物标志物开辟了新的平台和途径。利用基因组到蛋白质组学的方法,我们利用DNA微阵列和生物信息学工具,在自愿和健康的人类志愿者新鲜抽取的全血体外照射后,立即确定了一篮子20个“候选”辐射反应基因(RRGs)。候选RRGs已通过实时定量聚合酶链反应(RT-qPCR或qPCR)在mRNA水平上鉴定潜在的“候选”RRGs进行了部分验证。两个潜在的RRGs, CDNK1A和ZNF440,目前已被鉴定为在血液液体活检中有可能形成辐射应答蛋白的基因,这将最终成为未来基于荧光或elisa的定量免疫探针检测的基础,为高通量分子生物剂量测定技术奠定基础。更多的工作仍在继续。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Genome Integrity
Genome Integrity Biochemistry, Genetics and Molecular Biology-Genetics
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