[Dynamics of Irreversible Evaporation of a Water-Protein Droplet and a Problem of Structural and Dynamical Experiments with Single Molecules].

Biofizika Pub Date : 2016-03-01
K V Shaitan, G A Armeev, A K Shaytan
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Abstract

We discuss the effect of isothermal and adiabatic evaporation of water on the state of a water-protein droplet. The discussed problem is of current importance due to development of techniques to perform single molecule experiments using free electron lasers. In such structure-dynamic experiments the delivery of a sample into the X-ray beam is performed using the microdroplet injector. The time between the injection and delivery is in the order of microseconds. In this paper we developed a specialized variant of all-atom molecular dynamics simulations for the study of irreversible isothermal evaporation of the droplet. Using in silico experiments we determined the parameters of isothermal evaporation of the water-protein droplet with the sodium and chloride ions in the concentration range of 0.3 M at different temperatures. The energy of irreversible evaporation determined from in silico experiments at the initial stages of evaporation virtually coincides with the specific heat of evaporation for water. For the kinetics of irreversible adiabatic evaporation an exact analytical solution was obtained in the limit of high thermal conductivity of the droplet (or up to the droplet size of -100 Å). This analytical solution incorporates parameters that are determined using in silico. experiments on isothermal droplet evaporation. We show that the kinetics of adiabatic evaporation and cooling of the droplet scales with the droplet size. Our estimates of the water-protemi droplet. freezing rate in the adiabatic regime in a vacuum chamber show that additional techniques for stabilizing the temperature inside the droplet should be used in order to study the conformational transitions of the protein in single molecules. Isothermal and quasi-isothermal conditions are most suitable for studying the conformational transitions upon object functioning. However, in this case it is necessary to take into account the effects of dehydration and rapid increase of ionic strength in an aqueous microenvironment surrounding the protein.

[水-蛋白液滴不可逆蒸发动力学及单分子结构和动力学实验问题]。
讨论了水的等温和绝热蒸发对水-蛋白液滴状态的影响。由于使用自由电子激光进行单分子实验的技术的发展,所讨论的问题具有当前的重要性。在这种结构动力学实验中,使用微滴注入器将样品送入x射线束。注射和递送之间的时间以微秒为数量级。本文开发了一种专门的全原子分子动力学模拟,用于液滴不可逆等温蒸发的研究。通过硅片实验,测定了浓度为0.3 M的钠离子和氯离子在不同温度下对水蛋白滴的等温蒸发参数。在蒸发的初始阶段,由硅实验确定的不可逆蒸发能量实际上与水的蒸发比热一致。对于不可逆绝热蒸发动力学,在液滴的高导热极限(或液滴尺寸为-100 Å)下获得了精确的解析解。该分析解决方案包含了使用硅确定的参数。液滴等温蒸发实验。结果表明,液滴的绝热蒸发和冷却动力学随液滴尺寸的增大而增大。我们对水蛋白滴的估计。真空室绝热状态下的冷冻速率表明,为了研究单分子中蛋白质的构象转变,应该使用稳定液滴内部温度的额外技术。等温和准等温条件最适合研究物体作用下的构象转变。然而,在这种情况下,有必要考虑在蛋白质周围的水微环境中脱水和离子强度快速增加的影响。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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