Telomere length measurement by a novel Luminex-based assay: a blinded comparison to Southern blot.

International journal of molecular epidemiology and genetics Pub Date : 2016-03-23 eCollection Date: 2016-01-01
Brandon L Pierce, Farzana Jasmine, Shantanu Roy, Chenan Zhang, Abraham Aviv, Steven C Hunt, Habibul Ahsan, Muhammad G Kibriya
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Abstract

Telomere length (TL) is a potential biomarker of aging and age-related disease risk. We recently published a novel Luminex-based method for high-throughput, low-cost TL measurement. Here we describe a blinded comparison of the Luminex method to Southern blot, the most precise TL measurement method. Luminex and Southern blot measurements for the same 50 DNA samples were taken in two independent laboratories; each sample was measured twice, several months apart. The inter-assay CV for Luminex ranged from 5.5 to 9.1 (depending on CV estimation method), and Southern blot CV from 1.0 to 1.7. Both measures were inversely associated with age. The correlation between the repeated measurements was 0.66 for Luminex and 0.97 for Southern blot. The correlation between Southern blot and Luminex was 0.65 in round 1 and 0.75 in round 2, and the relationship showed no evidence of non-linearity. Our results demonstrate that the Luminex assay is a valid and reproducible method for high-throughput TL measurement. The Luminex assay involves no DNA amplification, which may make Luminex an attractive alternative to PCR-based TL measurement.

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端粒长度测量通过一种新的基于luminex的分析:盲法比较南方印迹。
端粒长度(TL)是衰老和年龄相关疾病风险的潜在生物标志物。我们最近发表了一种新的基于luminex的高通量、低成本TL测量方法。在这里,我们描述了Luminex方法与最精确的TL测量方法Southern blot的盲法比较。在两个独立的实验室对相同的50个DNA样本进行了Luminex和Southern blot测量;每个样本测量两次,间隔几个月。Luminex的检测间CV范围为5.5至9.1(取决于CV估计方法),而Southern blot的CV范围为1.0至1.7。这两项指标都与年龄呈负相关。Luminex重复测量的相关性为0.66,Southern blot的相关性为0.97。在第1轮和第2轮中,Southern blot与Luminex的相关系数分别为0.65和0.75,两者之间没有非线性关系。我们的结果表明,Luminex法是一种有效的、可重复的高通量TL测量方法。Luminex检测不涉及DNA扩增,这可能使Luminex成为基于pcr的TL测量的有吸引力的替代方案。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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