BatTool: an R package with GUI for assessing the effect of White-nose syndrome and other take events on Myotis spp. of bats.

Q2 Decision Sciences
Source Code for Biology and Medicine Pub Date : 2014-05-06 eCollection Date: 2014-01-01 DOI:10.1186/1751-0473-9-9
Richard A Erickson, Wayne E Thogmartin, Jennifer A Szymanski
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引用次数: 13

Abstract

Background: Myotis species of bats such as the Indiana Bat and Little Brown Bat are facing population declines because of White-nose syndrome (WNS). These species also face threats from anthropogenic activities such as wind energy development. Population models may be used to provide insights into threats facing these species. We developed a population model, BatTool, as an R package to help decision makers and natural resource managers examine factors influencing the dynamics of these species. The R package includes two components: 1) a deterministic and stochastic model that are accessible from the command line and 2) a graphical user interface (GUI).

Results: BatTool is an R package allowing natural resource managers and decision makers to understand Myotis spp. population dynamics. Through the use of a GUI, the model allows users to understand how WNS and other take events may affect the population. The results are saved both graphically and as data files. Additionally, R-savvy users may access the population functions through the command line and reuse the code as part of future research. This R package could also be used as part of a population dynamics or wildlife management course.

Conclusions: BatTool provides access to a Myotis spp. population model. This tool can help natural resource managers and decision makers with the Endangered Species Act deliberations for these species and with issuing take permits as part of regulatory decision making. The tool is available online as part of this publication.

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Abstract Image

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batool:一个带有GUI的R包,用于评估白鼻综合征和其他事件对蝙蝠Myotis的影响。
背景:由于白鼻综合征(WNS),印第安纳蝙蝠和小棕蝙蝠等Myotis种类的蝙蝠数量正面临下降。这些物种还面临着风能开发等人为活动的威胁。种群模型可以用来洞察这些物种面临的威胁。我们开发了一个种群模型,BatTool,作为一个R包,以帮助决策者和自然资源管理者检查影响这些物种动态的因素。R包包括两个组件:1)可从命令行访问的确定性和随机模型,2)图形用户界面(GUI)。结果:BatTool是一个R软件包,允许自然资源管理者和决策者了解Myotis的种群动态。通过使用GUI,该模型允许用户了解WNS和其他事件如何影响种群。结果以图形和数据文件两种形式保存。此外,精通r的用户可以通过命令行访问population函数,并在未来的研究中重用代码。这个R包也可以用作种群动态或野生动物管理课程的一部分。结论:BatTool提供了对Myotis种群模型的访问。这个工具可以帮助自然资源管理者和决策者对这些物种进行濒危物种法案的审议,并将发放捕捞许可证作为监管决策的一部分。该工具作为本出版物的一部分可在线获得。
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来源期刊
Source Code for Biology and Medicine
Source Code for Biology and Medicine Decision Sciences-Information Systems and Management
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期刊介绍: Source Code for Biology and Medicine is a peer-reviewed open access, online journal that publishes articles on source code employed over a wide range of applications in biology and medicine. The journal"s aim is to publish source code for distribution and use in the public domain in order to advance biological and medical research. Through this dissemination, it may be possible to shorten the time required for solving certain computational problems for which there is limited source code availability or resources.
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