A mathematical model for dynamics of CD40 clustering.

Systems and Synthetic Biology Pub Date : 2013-12-01 Epub Date: 2013-07-17 DOI:10.1007/s11693-013-9112-8
Uddipan Sarma, Prashant M Gade, Bhaskar Saha
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引用次数: 2

Abstract

Ligand bound-receptors in a signalosome complex trigger signals to determine cellular functions. Upon ligand binding, the ligand-receptor complexes form clusters on cell membrane. Guided by the previous experimental reports on the cluster formation of CD40, a trans membrane receptor for CD40-ligand, we built a minimal model of the receptor cluster formation. In this model, we studied co-operative and non-co-operative clustering of a maximum of four CD40 molecules assuming a positive mediator of clustering such as cholesterol to be present in both cases. We observed that co-operative interactions between CD40 molecules resulted in more of the largest CD40 clusters than that observed with the non-co-operatively interacting CD40 molecules. We performed global sensitivity analysis on the model parameters and the analyses suggested that cholesterol influenced only the initial stage of the co-operatively clustering CD40 molecules but it affects both the initial and the final stages in case of the non-co-operatively clustering CD40 molecules. Robustness analyses revealed that in both co-operative and non-co-operative interactions, the higher order clusters beyond a critical size are more robust with respect to alterations in the environmental parameters including the cholesterol. Thus, the role of co-operative and non-co-operative interactions in environment-influenced receptor clustering is reported for the first time.

Abstract Image

Abstract Image

CD40聚类动力学的数学模型。
信号体复合体中的配体结合受体触发决定细胞功能的信号。配体结合后,配体-受体复合物在细胞膜上形成簇状结构。在前人关于CD40配体的跨膜受体CD40簇形成的实验报道的指导下,我们建立了受体簇形成的最小模型。在这个模型中,我们研究了最多四个CD40分子的合作和非合作聚类,假设在这两种情况下都存在一个积极的聚类介质,如胆固醇。我们观察到,CD40分子之间的合作相互作用比非合作相互作用的CD40分子产生更多的最大CD40簇。我们对模型参数进行了全局敏感性分析,分析表明胆固醇仅影响CD40分子合作聚类的初始阶段,但在CD40分子非合作聚类的情况下,它会影响初始和最终阶段。鲁棒性分析显示,在合作和非合作相互作用中,超过临界尺寸的高阶集群对包括胆固醇在内的环境参数的变化更为稳健。因此,首次报道了合作和非合作相互作用在环境影响受体聚集中的作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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