The putative small terminase from the thermophilic dsDNA bacteriophage G20C is a nine-subunit oligomer.

IF 0.9 4区 生物学
Juan Loredo-Varela, Maria Chechik, Vladimir M Levdikov, Ahmad Abd-El-Aziz, Leonid Minakhin, Konstantin Severinov, Callum Smits, Alfred A Antson
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Abstract

The assembly of double-stranded DNA bacteriophages is dependent on a small terminase protein that normally plays two important roles. Firstly, the small terminase protein specifically recognizes viral DNA and recruits the large terminase protein, which makes the initial cut in the dsDNA. Secondly, once the complex of the small terminase, the large terminase and the DNA has docked to the portal protein, and DNA translocation into a preformed empty procapsid has begun, the small terminase modulates the ATPase activity of the large terminase. Here, the putative small terminase protein from the thermostable bacteriophage G20C, which infects the Gram-negative eubacterium Thermus thermophilus, has been produced, purified and crystallized. Size-exclusion chromatography-multi-angle laser light scattering data indicate that the protein forms oligomers containing nine subunits. Crystals diffracting to 2.8 Å resolution have been obtained. These belonged to space group P2₁2₁2₁, with unit-cell parameters a = 94.31, b = 125.6, c = 162.8 Å. The self-rotation function and Matthews coefficient calculations are consistent with the presence of a nine-subunit oligomer in the asymmetric unit.

Abstract Image

Abstract Image

Abstract Image

嗜热dsDNA噬菌体G20C的推定小终结酶是一个九亚基寡聚体。
双链DNA噬菌体的组装依赖于一种小的终止酶蛋白,它通常扮演两个重要角色。首先,小终结酶蛋白能特异性地识别病毒 DNA,并招募大终结酶蛋白,由大终结酶蛋白对 dsDNA 进行初始切割。其次,一旦小终结酶、大终结酶和 DNA 的复合物与入口蛋白对接,DNA 开始转运到预先形成的空原囊体中,小终结酶就会调节大终结酶的 ATP 酶活性。本文制备、纯化并结晶了感染革兰氏阴性嗜热菌的恒温噬菌体 G20C 的推定小终结酶蛋白。尺寸排阻色谱-多角度激光光散射数据表明,该蛋白质形成了包含九个亚基的低聚物。晶体衍射分辨率为 2.8 Å。这些晶体属于空间群 P2₁2₁2₁,单胞参数 a = 94.31、b = 125.6、c = 162.8 Å。
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期刊介绍: Acta Crystallographica Section F is a rapid structural biology communications journal. Articles on any aspect of structural biology, including structures determined using high-throughput methods or from iterative studies such as those used in the pharmaceutical industry, are welcomed by the journal. The journal offers the option of open access, and all communications benefit from unlimited free use of colour illustrations and no page charges. Authors are encouraged to submit multimedia content for publication with their articles. Acta Cryst. F has a dedicated online tool called publBio that is designed to make the preparation and submission of articles easier for authors.
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