The superstructure determination of displacive distortions via symmetry-mode analysis.

IF 1.8 4区 材料科学
Acta Crystallographica Section A Pub Date : 2012-03-01 Epub Date: 2012-01-05 DOI:10.1107/S0108767311046241
Sean Kerman, Branton J Campbell, Kiran K Satyavarapu, Harold T Stokes, Francesca Perselli, John S O Evans
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引用次数: 21

Abstract

For any crystal structure that can be viewed as a low-symmetry distortion of some higher-symmetry parent structure, one can represent the details of the distorted structure in terms of symmetry-adapted distortion modes of the parent structure rather than the traditional list of atomic xyz coordinates. Because most symmetry modes tend to be inactive, and only a relatively small number of mode amplitudes are dominant in producing the observed distortion, symmetry-mode analysis can greatly simplify the determination of a displacively distorted structure from powder diffraction data. This is an important capability when peak splittings are small, superlattice intensities are weak or systematic absences fail to distinguish between candidate symmetries. Here, the symmetry-mode basis is treated as a binary (on/off) parameter set that spans the space of all possible P1 symmetry distortions within the experimentally determined supercell. Using the average R(wp) over repeated local minimizations from random starting points as a cost function for a given mode set, global search strategies are employed to identify the active modes of the distortion. This procedure automatically yields the amplitudes of the active modes and the associated atomic coordinates. The active modes are then used to detect the space-group symmetry of the distorted phase (i.e. the type and location of each of the parent symmetry elements that remain within the distorted supercell). Once a handful of active modes are identified, traditional refinement methods readily yield their amplitudes and the resulting atomic coordinates. A final symmetry-mode refinement is then performed in the correct space-group symmetry to improve the sensitivity to any secondary modes present.

上部结构位移变形的对称模态分析。
对于任何可以被看作是高对称母结构的低对称畸变的晶体结构,可以用母结构的对称适应畸变模式而不是传统的原子xyz坐标表来表示畸变结构的细节。由于大多数对称模往往是不活跃的,并且只有相对较少的模幅在产生所观察到的畸变中占主导地位,对称模分析可以大大简化从粉末衍射数据确定位移畸变结构。当峰分裂小、超晶格强度弱或系统缺失无法区分候选对称性时,这是一个重要的能力。在这里,对称模式基被视为一个二进制(开/关)参数集,它跨越了实验确定的超级单体中所有可能的P1对称扭曲的空间。利用随机起始点的重复局部极小值的平均R(wp)作为给定模式集的代价函数,采用全局搜索策略来识别失真的活动模式。此过程自动生成活动模式的振幅和相关的原子坐标。然后使用活动模式来检测扭曲相位的空间群对称性(即,在扭曲的超级单体内保留的每个母对称元素的类型和位置)。一旦确定了少数活动模式,传统的改进方法很容易得到它们的振幅和由此产生的原子坐标。然后在正确的空间群对称中进行最后的对称模式细化,以提高对存在的任何二次模式的灵敏度。
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来源期刊
自引率
11.10%
发文量
0
审稿时长
3 months
期刊介绍: Acta Crystallographica Section A: Foundations and Advances publishes articles reporting advances in the theory and practice of all areas of crystallography in the broadest sense. As well as traditional crystallography, this includes nanocrystals, metacrystals, amorphous materials, quasicrystals, synchrotron and XFEL studies, coherent scattering, diffraction imaging, time-resolved studies and the structure of strain and defects in materials. The journal has two parts, a rapid-publication Advances section and the traditional Foundations section. Articles for the Advances section are of particularly high value and impact. They receive expedited treatment and may be highlighted by an accompanying scientific commentary article and a press release. Further details are given in the November 2013 Editorial. The central themes of the journal are, on the one hand, experimental and theoretical studies of the properties and arrangements of atoms, ions and molecules in condensed matter, periodic, quasiperiodic or amorphous, ideal or real, and, on the other, the theoretical and experimental aspects of the various methods to determine these properties and arrangements.
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