Spindles and active vortices in a model of confined filament-motor mixtures.

Q1 Biochemistry, Genetics and Molecular Biology
David A Head, Wj Briels, Gerhard Gompper
{"title":"Spindles and active vortices in a model of confined filament-motor mixtures.","authors":"David A Head,&nbsp;Wj Briels,&nbsp;Gerhard Gompper","doi":"10.1186/2046-1682-4-18","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Robust self-organization of subcellular structures is a key principle governing the dynamics and evolution of cellular life. In fission yeast cells undergoing division, the mitotic spindle spontaneously emerges from the interaction of microtubules, motor proteins and the confining cell walls, and asters and vortices have been observed to self-assemble in quasi-two dimensional microtubule-kinesin assays. There is no clear microscopic picture of the role of the active motors driving this pattern formation, and the relevance of continuum modeling to filament-scale structures remains uncertain.</p><p><strong>Results: </strong>Here we present results of numerical simulations of a discrete filament-motor protein model confined to a pressurised cylindrical box. Stable spindles, nematic configurations, asters and high-density semi-asters spontaneously emerge, the latter pair having also been observed in cytosol confined within emulsion droplets. State diagrams are presented delineating each stationary state as the pressure, motor speed and motor density are varied. We further highlight a parameter regime where vortices form exhibiting collective rotation of all filaments, but have a finite life-time before contracting to a semi-aster. Quantifying the distribution of life-times suggests this contraction is a Poisson process. Equivalent systems with fixed volume exhibit persistent vortices with stochastic switching in the direction of rotation, with switching times obeying similar statistics to contraction times in pressurised systems. Furthermore, we show that increasing the detachment rate of motors from filament plus-ends can both destroy vortices and turn some asters into vortices.</p><p><strong>Conclusions: </strong>We have shown that discrete filament-motor protein models provide new insights into the stationary and dynamical behavior of active gels and subcellular structures, because many phenomena occur on the length-scale of single filaments. Based on our findings, we argue the need for a deeper understanding of the microscopic activities underpinning macroscopic self-organization in active gels and urge further experiments to help bridge these lengths.</p>","PeriodicalId":9045,"journal":{"name":"BMC Biophysics","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2011-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/2046-1682-4-18","citationCount":"13","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"BMC Biophysics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/2046-1682-4-18","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 13

Abstract

Background: Robust self-organization of subcellular structures is a key principle governing the dynamics and evolution of cellular life. In fission yeast cells undergoing division, the mitotic spindle spontaneously emerges from the interaction of microtubules, motor proteins and the confining cell walls, and asters and vortices have been observed to self-assemble in quasi-two dimensional microtubule-kinesin assays. There is no clear microscopic picture of the role of the active motors driving this pattern formation, and the relevance of continuum modeling to filament-scale structures remains uncertain.

Results: Here we present results of numerical simulations of a discrete filament-motor protein model confined to a pressurised cylindrical box. Stable spindles, nematic configurations, asters and high-density semi-asters spontaneously emerge, the latter pair having also been observed in cytosol confined within emulsion droplets. State diagrams are presented delineating each stationary state as the pressure, motor speed and motor density are varied. We further highlight a parameter regime where vortices form exhibiting collective rotation of all filaments, but have a finite life-time before contracting to a semi-aster. Quantifying the distribution of life-times suggests this contraction is a Poisson process. Equivalent systems with fixed volume exhibit persistent vortices with stochastic switching in the direction of rotation, with switching times obeying similar statistics to contraction times in pressurised systems. Furthermore, we show that increasing the detachment rate of motors from filament plus-ends can both destroy vortices and turn some asters into vortices.

Conclusions: We have shown that discrete filament-motor protein models provide new insights into the stationary and dynamical behavior of active gels and subcellular structures, because many phenomena occur on the length-scale of single filaments. Based on our findings, we argue the need for a deeper understanding of the microscopic activities underpinning macroscopic self-organization in active gels and urge further experiments to help bridge these lengths.

Abstract Image

Abstract Image

Abstract Image

约束细丝-马达混合模型中的纺锤和活动涡。
背景:亚细胞结构的鲁棒自组织是控制细胞生命动力学和进化的关键原理。在进行分裂的分裂酵母细胞中,有丝分裂纺锤体自发地从微管、运动蛋白和围胞壁的相互作用中产生,在准二维微管运动蛋白测定中观察到aster和漩涡自组装。对于主动马达驱动这种模式形成的作用,目前还没有清晰的微观图像,而连续体模型与细丝尺度结构的相关性仍然不确定。结果:在这里,我们提出了一个离散的细丝马达蛋白模型的数值模拟结果,该模型被限制在一个加压的圆柱形盒子中。稳定的纺锤,向列构型,紫苑和高密度半紫苑自发出现,后者对也被观察到限制在乳状液滴内的细胞质。状态图描述了压力、电机速度和电机密度变化时的每个静止状态。我们进一步强调了一种参数制度,其中漩涡形成显示所有细丝的集体旋转,但在收缩到半aster之前具有有限的寿命。量化寿命的分布表明,这种收缩是一个泊松过程。具有固定体积的等效系统在旋转方向上具有随机切换的持续涡旋,其切换时间遵循与加压系统中的收缩时间相似的统计数据。此外,我们还表明,增加马达与长丝正端的分离率既可以破坏涡流,也可以使一些aster变成涡流。结论:我们已经证明,离散丝-运动蛋白模型为活性凝胶和亚细胞结构的静态和动态行为提供了新的见解,因为许多现象发生在单丝的长度尺度上。基于我们的发现,我们认为有必要更深入地了解活性凝胶中支撑宏观自组织的微观活动,并敦促进一步的实验来帮助弥合这些长度。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
BMC Biophysics
BMC Biophysics BIOPHYSICS-
自引率
0.00%
发文量
0
审稿时长
>12 weeks
期刊介绍: Cessation
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信