K Akiyama, K Shimada, E Takeda, T Yoshii, I Ishiyama
{"title":"[The structural polymorphism in D8S580-STR region].","authors":"K Akiyama, K Shimada, E Takeda, T Yoshii, I Ishiyama","doi":"","DOIUrl":null,"url":null,"abstract":"<p><p>The STR structure of the D8S580 locus was analyzed by the base sequencing technique. Alleles were collected separately by urea denaturing polyacrylamide gel electrophoresis of the PCR amplification product, followed by cutting of the target DNA band from the gel, and reamplification. As a result, this locus was shown to have a complex STR structure consisting of four types of repeat units, i.e. GGAA (II), GAAA (III), GAAAA (IV), and GCAA (V). Of 53 unrelated Japanese individuals, 51 were heterozygous, and the most frequent allele was type IV 8-II 7 III 6 III 3 (16%). Forty-four alleles with distinct structures appeared once the samples tested. As 57 different alleles were detected in this study, this region is considered to be one of the locus that have a high degree of repetitive structural polymorphism and therefore useful in forensic science.</p>","PeriodicalId":19215,"journal":{"name":"Nihon hoigaku zasshi = The Japanese journal of legal medicine","volume":"53 2","pages":"227-30"},"PeriodicalIF":0.0000,"publicationDate":"1999-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Nihon hoigaku zasshi = The Japanese journal of legal medicine","FirstCategoryId":"1085","ListUrlMain":"","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
The STR structure of the D8S580 locus was analyzed by the base sequencing technique. Alleles were collected separately by urea denaturing polyacrylamide gel electrophoresis of the PCR amplification product, followed by cutting of the target DNA band from the gel, and reamplification. As a result, this locus was shown to have a complex STR structure consisting of four types of repeat units, i.e. GGAA (II), GAAA (III), GAAAA (IV), and GCAA (V). Of 53 unrelated Japanese individuals, 51 were heterozygous, and the most frequent allele was type IV 8-II 7 III 6 III 3 (16%). Forty-four alleles with distinct structures appeared once the samples tested. As 57 different alleles were detected in this study, this region is considered to be one of the locus that have a high degree of repetitive structural polymorphism and therefore useful in forensic science.
采用碱基测序技术分析了D8S580基因座的STR结构。对PCR扩增产物进行尿素变性聚丙烯酰胺凝胶电泳,分别收集等位基因,然后从凝胶上切下目标DNA条带,重新扩增。结果表明,该基因座具有复杂的STR结构,由四种重复单元组成,即GGAA (II)、GAAA (III)、GAAAA (IV)和GCAA (V)。在53个无亲缘关系的日本个体中,51个为杂合子,最常见的等位基因为IV型8-II 7 III 6 III 3(16%)。在对样本进行测试后,出现了44个结构不同的等位基因。由于在本研究中检测到57种不同的等位基因,因此该区域被认为是具有高度重复结构多态性的位点之一,因此在法医学中具有重要意义。