DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis.

Computer applications in the biosciences : CABIOS Pub Date : 1997-06-01

J Rozas, R Rozas

{"title":"DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis.","authors":"J Rozas, R Rozas","doi":"","DOIUrl":null,"url":null,"abstract":"Motivation: Several methods in molecular population genetics have recently been described to estimate the amount and pattern of the DNA polymorphism in natural populations, and also to test the neutral theory of molecular evolution. These methods are essential for understanding the molecular evolutionary process. However, a comprehensive computer program for the analysis is not currently available.Results: Here we present DnaSP (DNA Sequence Polymorphism) version 2.0, a software package for Windows that performs extensive population genetics analyses on DNA sequence data. DnaSP estimates several measures of DNA sequence variation within and between populations, linkage disequilibrium, recombination, gene flow and gene conversion (a new algorithm to detect gene conversion tracts has been included). DnaSP can also carry out several tests of neutrality: those of Fu and Li; Hudson, Kreitman and Aguadé; and Tajima. The results of the analyses are displayed in tabular and graphic form.Availability: For academic uses, DnaSP is available via anonymous ftp: ftp.ebi.ac.uk in the directory/pub/software/dos.","PeriodicalId":77081,"journal":{"name":"Computer applications in the biosciences : CABIOS","volume":"13 3","pages":"307-11"},"PeriodicalIF":0.0000,"publicationDate":"1997-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer applications in the biosciences : CABIOS","FirstCategoryId":"1085","ListUrlMain":"","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}

引用次数: 0

Abstract

Motivation: Several methods in molecular population genetics have recently been described to estimate the amount and pattern of the DNA polymorphism in natural populations, and also to test the neutral theory of molecular evolution. These methods are essential for understanding the molecular evolutionary process. However, a comprehensive computer program for the analysis is not currently available.

Results: Here we present DnaSP (DNA Sequence Polymorphism) version 2.0, a software package for Windows that performs extensive population genetics analyses on DNA sequence data. DnaSP estimates several measures of DNA sequence variation within and between populations, linkage disequilibrium, recombination, gene flow and gene conversion (a new algorithm to detect gene conversion tracts has been included). DnaSP can also carry out several tests of neutrality: those of Fu and Li; Hudson, Kreitman and Aguadé; and Tajima. The results of the analyses are displayed in tabular and graphic form.

Availability: For academic uses, DnaSP is available via anonymous ftp: ftp.ebi.ac.uk in the directory/pub/software/dos.

本刊更多论文

DnaSP 2.0版:一个新颖的软件包，广泛的分子群体遗传学分析。

动机:近年来，分子群体遗传学的几种方法被描述用于估计自然群体中DNA多态性的数量和模式，也用于检验分子进化的中性理论。这些方法对于理解分子进化过程是必不可少的。然而，目前还没有一个全面的分析计算机程序。结果:在这里，我们提出了DnaSP (DNA序列多态性)2.0版本，这是一个用于Windows的软件包，可以对DNA序列数据进行广泛的群体遗传学分析。DnaSP估计了种群内和种群之间的DNA序列变异、连锁不平衡、重组、基因流动和基因转换的几种措施(包括一种检测基因转换束的新算法)。DnaSP还可以进行几种中立性测试:Fu和Li测试;Hudson, Kreitman and aguad;和日本田岛。分析结果以表格和图形形式显示。可用性:对于学术用途，可以通过/pub/software/dos目录下的匿名ftp: ftp.ebi.ac.uk获得DnaSP。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

求助全文

约1分钟内获得全文求助全文

来源期刊

Computer applications in the biosciences : CABIOS

自引率

0.00%

发文量