Masoom Shaban, Adri C. T. van Duin, Diana van Duin, Margaret Kowalik, Mohammad E. Izadi, Alfred P. Weber, Nina Merkert
{"title":"A New Reactive Force Field for NOx-Water Interactions: Development, Evaluation, and Molecular Dynamics Simulation of Peroxynitrite","authors":"Masoom Shaban, Adri C. T. van Duin, Diana van Duin, Margaret Kowalik, Mohammad E. Izadi, Alfred P. Weber, Nina Merkert","doi":"10.1021/acs.jpcb.6c03657","DOIUrl":null,"url":null,"abstract":"<p>Reactive nitrogen\r\nspecies (RNSs) are key contributors to plasma-liquid\r\nprocesses and play a critical role in the chemistry of plasma-activated\r\nwater (PAW). Despite their importance, their molecular-level behavior\r\nin aqueous environments is still not well understood, largely due\r\nto the absence of reliable reactive force fields. In this study, a\r\nnew ReaxFF parameter set, ReaxFF<sub>CHONx</sub>-2026, is developed\r\nand systematically assessed for modeling nitrogen- and oxygen-containing\r\nreactive species under both gas-phase and aqueous conditions relevant\r\nto plasma systems. The parameter set is optimized using density functional\r\ntheory (DFT) reference data for representative NO<sub><em>x</em></sub> reaction pathways and integrated with an existing aqueous/biomolecular\r\nReaxFF framework to enable reactive molecular dynamics simulations\r\nin water. Its performance is validated through a range of structural,\r\nthermodynamic, and dynamic properties including radial distribution\r\nfunctions, potential energy profiles, and diffusion coefficients.\r\nThe results demonstrate strong agreement with DFT calculations and\r\npreviously reported data, particularly in describing N–O bond\r\nbreaking and solvation behavior. As a case study, the interaction\r\nof peroxynitrite (ONOO<sup>–</sup>) with water is investigated\r\nusing reactive molecular dynamics, where atomic charges are dynamically\r\ndetermined via the ReaxFF charge equilibration method. The simulations\r\nshow protonation leading to ONOOH formation, pronounced site-specific\r\nsolvation around oxygen atoms, and preferential cleavage of the peroxide\r\nO–O bond. Analysis of diffusion further indicates that the\r\npredicted transport properties of RNS are consistent with the available\r\ndata, supporting the reliability of the developed force field. Overall,\r\nReaxFF<sub>CHONx</sub>-2026 offers a robust framework for large-scale\r\natomistic simulations of PAW and reactive nitrogen chemistry.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":"130 40","pages":"10540–10550"},"PeriodicalIF":3.2000,"publicationDate":"2026-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"The Journal of Physical Chemistry B","FirstCategoryId":"1","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.jpcb.6c03657","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2026/9/25 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
Abstract
Reactive nitrogen
species (RNSs) are key contributors to plasma-liquid
processes and play a critical role in the chemistry of plasma-activated
water (PAW). Despite their importance, their molecular-level behavior
in aqueous environments is still not well understood, largely due
to the absence of reliable reactive force fields. In this study, a
new ReaxFF parameter set, ReaxFFCHONx-2026, is developed
and systematically assessed for modeling nitrogen- and oxygen-containing
reactive species under both gas-phase and aqueous conditions relevant
to plasma systems. The parameter set is optimized using density functional
theory (DFT) reference data for representative NOx reaction pathways and integrated with an existing aqueous/biomolecular
ReaxFF framework to enable reactive molecular dynamics simulations
in water. Its performance is validated through a range of structural,
thermodynamic, and dynamic properties including radial distribution
functions, potential energy profiles, and diffusion coefficients.
The results demonstrate strong agreement with DFT calculations and
previously reported data, particularly in describing N–O bond
breaking and solvation behavior. As a case study, the interaction
of peroxynitrite (ONOO–) with water is investigated
using reactive molecular dynamics, where atomic charges are dynamically
determined via the ReaxFF charge equilibration method. The simulations
show protonation leading to ONOOH formation, pronounced site-specific
solvation around oxygen atoms, and preferential cleavage of the peroxide
O–O bond. Analysis of diffusion further indicates that the
predicted transport properties of RNS are consistent with the available
data, supporting the reliability of the developed force field. Overall,
ReaxFFCHONx-2026 offers a robust framework for large-scale
atomistic simulations of PAW and reactive nitrogen chemistry.
期刊介绍:
An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.