Jure Kovač, Andrej Jamnik, István Szilágyi, Matija Tomšič
{"title":"Angle-dependent X-ray absorption correction in small- and wide-angle X-ray scattering: accounting for constrained scattering volume, beam profiles and capillary wall attenuation.","authors":"Jure Kovač, Andrej Jamnik, István Szilágyi, Matija Tomšič","doi":"10.1107/S1600576726006837","DOIUrl":null,"url":null,"abstract":"<p><p>A GPU-accelerated numerical method has been developed to calculate angle-dependent transmission factors <i>A</i>(2θ) for small- and wide-angle X-ray scattering (SWAXS) data collected with a Kratky-type camera using a line-collimated beam and a horizontal cylindrical capillary with a vertically oriented detector. The procedure extends path-length-based absorption correction to the Kratky-type geometry by averaging Beer-Lambert attenuation over the constrained illuminated scattering volume and by including experimentally measured primary beam profiles and capillary-wall absorption. Sensitivity analysis shows that the vertical illumination geometry dominates the calculated angle-dependent transmission factor, whereas the horizontal beam-width effect is negligible. Using measured beam profiles makes the correction instrument specific and avoids introducing an effective uniform beam height as an approximation. For strongly absorbing nona-fluoro-<i>tert</i>-butanol, the conventional scalar primary beam transmission correction fails after subtraction of empty-capillary scattering, while the numerical correction enables physically meaningful absolute-scale data reduction. Comparisons between independently calculated theoretical SWAXS intensities and the two reduced experimental datasets obtained sequentially using two different detectors in the same experiment on the same Kratky-type SWAXS camera provide a direct experimental cross check for the data-reduction workflow based on calculated transmission factors. They indicate that the observed limitation is associated with transmission measurement of a spectrally modified primary beam, rather than with the Kratky-type geometry itself. Importantly, the results show that the limitations of conventional scalar transmission corrections are not confined to extreme cases but may also affect routine water-based absolute-scale SWAXS calibration. A simple Beer-Lambert-type numerical scalar correction can still provide a useful qualitative approximation, whereas reliable quantitative analysis requires the full angle-dependent <i>A</i>(2θ) correction.</p>","PeriodicalId":14950,"journal":{"name":"Journal of Applied Crystallography","volume":"59 Pt 5","pages":"1374-1383"},"PeriodicalIF":2.8000,"publicationDate":"2026-08-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13636045/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Applied Crystallography","FirstCategoryId":"88","ListUrlMain":"https://doi.org/10.1107/S1600576726006837","RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2026/10/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 0
Abstract
A GPU-accelerated numerical method has been developed to calculate angle-dependent transmission factors A(2θ) for small- and wide-angle X-ray scattering (SWAXS) data collected with a Kratky-type camera using a line-collimated beam and a horizontal cylindrical capillary with a vertically oriented detector. The procedure extends path-length-based absorption correction to the Kratky-type geometry by averaging Beer-Lambert attenuation over the constrained illuminated scattering volume and by including experimentally measured primary beam profiles and capillary-wall absorption. Sensitivity analysis shows that the vertical illumination geometry dominates the calculated angle-dependent transmission factor, whereas the horizontal beam-width effect is negligible. Using measured beam profiles makes the correction instrument specific and avoids introducing an effective uniform beam height as an approximation. For strongly absorbing nona-fluoro-tert-butanol, the conventional scalar primary beam transmission correction fails after subtraction of empty-capillary scattering, while the numerical correction enables physically meaningful absolute-scale data reduction. Comparisons between independently calculated theoretical SWAXS intensities and the two reduced experimental datasets obtained sequentially using two different detectors in the same experiment on the same Kratky-type SWAXS camera provide a direct experimental cross check for the data-reduction workflow based on calculated transmission factors. They indicate that the observed limitation is associated with transmission measurement of a spectrally modified primary beam, rather than with the Kratky-type geometry itself. Importantly, the results show that the limitations of conventional scalar transmission corrections are not confined to extreme cases but may also affect routine water-based absolute-scale SWAXS calibration. A simple Beer-Lambert-type numerical scalar correction can still provide a useful qualitative approximation, whereas reliable quantitative analysis requires the full angle-dependent A(2θ) correction.
期刊介绍:
Many research topics in condensed matter research, materials science and the life sciences make use of crystallographic methods to study crystalline and non-crystalline matter with neutrons, X-rays and electrons. Articles published in the Journal of Applied Crystallography focus on these methods and their use in identifying structural and diffusion-controlled phase transformations, structure-property relationships, structural changes of defects, interfaces and surfaces, etc. Developments of instrumentation and crystallographic apparatus, theory and interpretation, numerical analysis and other related subjects are also covered. The journal is the primary place where crystallographic computer program information is published.