Angle-dependent X-ray absorption correction in small- and wide-angle X-ray scattering: accounting for constrained scattering volume, beam profiles and capillary wall attenuation.

IF 2.8 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology
Journal of Applied Crystallography Pub Date : 2026-08-06 eCollection Date: 2026-10-01 DOI:10.1107/S1600576726006837
Jure Kovač, Andrej Jamnik, István Szilágyi, Matija Tomšič
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引用次数: 0

Abstract

A GPU-accelerated numerical method has been developed to calculate angle-dependent transmission factors A(2θ) for small- and wide-angle X-ray scattering (SWAXS) data collected with a Kratky-type camera using a line-collimated beam and a horizontal cylindrical capillary with a vertically oriented detector. The procedure extends path-length-based absorption correction to the Kratky-type geometry by averaging Beer-Lambert attenuation over the constrained illuminated scattering volume and by including experimentally measured primary beam profiles and capillary-wall absorption. Sensitivity analysis shows that the vertical illumination geometry dominates the calculated angle-dependent transmission factor, whereas the horizontal beam-width effect is negligible. Using measured beam profiles makes the correction instrument specific and avoids introducing an effective uniform beam height as an approximation. For strongly absorbing nona-fluoro-tert-butanol, the conventional scalar primary beam transmission correction fails after subtraction of empty-capillary scattering, while the numerical correction enables physically meaningful absolute-scale data reduction. Comparisons between independently calculated theoretical SWAXS intensities and the two reduced experimental datasets obtained sequentially using two different detectors in the same experiment on the same Kratky-type SWAXS camera provide a direct experimental cross check for the data-reduction workflow based on calculated transmission factors. They indicate that the observed limitation is associated with transmission measurement of a spectrally modified primary beam, rather than with the Kratky-type geometry itself. Importantly, the results show that the limitations of conventional scalar transmission corrections are not confined to extreme cases but may also affect routine water-based absolute-scale SWAXS calibration. A simple Beer-Lambert-type numerical scalar correction can still provide a useful qualitative approximation, whereas reliable quantitative analysis requires the full angle-dependent A(2θ) correction.

小角和广角x射线散射中角度相关的x射线吸收校正:考虑约束散射体积、光束剖面和毛细壁衰减。
本文提出了一种gpu加速的数值计算方法,用于计算kratky型相机采集的小角和广角x射线散射(SWAXS)数据的角度相关透射系数A(2θ),该方法采用线准直光束和水平圆柱形毛细管,并带有垂直定向探测器。该方法将基于路径长度的吸收校正扩展到克拉特基型几何,方法是在受限的照明散射体积上平均比尔-朗伯衰减,并包括实验测量的主光束剖面和毛细管壁吸收。灵敏度分析表明,垂直照明几何形状对计算的角度相关透射系数起主导作用,而水平波束宽度的影响可以忽略不计。使用测量的光束轮廓使校正仪器具有特异性,并避免引入有效的均匀光束高度作为近似值。对于强吸收非氟叔丁醇,传统的标量一次光束透射校正在减去空毛细散射后失效,而数值校正使物理上有意义的绝对尺度数据缩减。将独立计算的理论swax强度与在同一台kratky型swxs相机上使用两种不同探测器在同一实验中依次获得的两个约简实验数据集进行比较,为基于计算透射因子的数据约简工作流程提供了直接的实验交叉检验。他们指出,观察到的限制与光谱修饰的主光束的透射测量有关,而不是与克拉特基型几何本身有关。重要的是,结果表明,传统的标量透射校正的局限性不仅限于极端情况,还可能影响常规的水基绝对尺度SWAXS校准。简单的beer - lambert型数值标量校正仍然可以提供有用的定性近似,而可靠的定量分析需要完全依赖于角度的A(2θ)校正。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
10.00
自引率
3.30%
发文量
178
审稿时长
4.7 months
期刊介绍: Many research topics in condensed matter research, materials science and the life sciences make use of crystallographic methods to study crystalline and non-crystalline matter with neutrons, X-rays and electrons. Articles published in the Journal of Applied Crystallography focus on these methods and their use in identifying structural and diffusion-controlled phase transformations, structure-property relationships, structural changes of defects, interfaces and surfaces, etc. Developments of instrumentation and crystallographic apparatus, theory and interpretation, numerical analysis and other related subjects are also covered. The journal is the primary place where crystallographic computer program information is published.
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