Theoretical insights into two types of Se···N Chalcogen Bonds between phenylselenium halides (PhSeX, X = F, Cl, Br, I) and pyridine: perpendicular versus linear binding modes via tunable σ-holes

IF 2.9 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Mengna Huang, Junyong Wu, Hua Yan
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Abstract

Context

In this work, the Se···N chalcogen-bonding interactions in pyridine-phenylselenium halides (C5H5N-PhSeX, X = F, Cl, Br, and I) complexes were systematically investigated at the ωB97XD/def2-TZVPD theoretical level. Two typical structural configurations, namely perpendicular and linear orientations, were identified for all studied complexes. The calculated binding energies suggest that the linear-oriented systems exhibit remarkably stronger intermolecular interactions (− 6 to − 12 kcal/mol) than their perpendicular counterparts (− 2 to − 4 kcal/mol). For the perpendicular-oriented structures dominated by chalcogen-bonding with secondary hydrogen-bonding interactions, the intermolecular interaction strength increases in the order F > I > Br > Cl. In contrast, the interaction strength of linear-oriented chalcogen-bonding complexes follows the sequence of F > Cl > Br > I. Energy component analysis indicates that both electrostatic and dispersion contributions dominate the attractive forces in perpendicular chalcogen-bonded systems. By comparison, the stabilization of linear complexes is predominantly governed by electrostatic interactions.

Methods

Geometry optimizations of all complexes and the corresponding monomers were carried out at the ωB97XD/def2-TZVPD level. The nature of the intermolecular interactions was then characterized by NBO population analysis, QTAIM (AIM), and IRI analyses.In addition,the interaction energies of the two types of chalcogen-bonded complexes were further decomposed by means of symmetry-adapted perturbation theory (SAPT).

苯基卤化硒(PhSeX, X = F, Cl, Br, I)和吡啶之间的两种Se··N键的理论见解:通过可调σ-空穴的垂直与线性结合模式
本文在ωB97XD/def2-TZVPD理论水平上系统地研究了吡啶-苯基卤化硒(C5H5N-PhSeX, X = F, Cl, Br和I)配合物中Se···N硫键的相互作用。两种典型的结构构型,即垂直和线性取向,确定了所有研究的配合物。计算的结合能表明,线性取向体系的分子间相互作用(- 6 ~ - 12 kcal/mol)明显强于垂直取向体系(- 2 ~ - 4 kcal/mol)。对于以硫键为主的垂直取向结构,分子间相互作用强度依次为F >; I > Br > Cl。相反,线性取向的硫键配合物的相互作用强度遵循F >; Cl > Br >; I的顺序。能量分量分析表明,在垂直的硫键体系中,静电和色散的贡献都是主要的吸引力。相比之下,线性配合物的稳定主要由静电相互作用决定。方法在ωB97XD/def2-TZVPD水平上对配合物及单体进行几何优化。然后通过NBO群体分析、QTAIM (AIM)和IRI分析表征了分子间相互作用的性质。此外,利用对称自适应微扰理论(SAPT)进一步分解了两类硫键配合物的相互作用能。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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