A global consistent database of plankton and detritus from in situ imaging by the Underwater Vision Profiler 5

IF 13.6 1区 地球科学 Q1 GEOSCIENCES, MULTIDISCIPLINARY
Ariadna C. Nocera,Lars Stemmann,Marcel Babin,Tristan Biard,Julie Coustenoble,François Carlotti,Laurent Coppola,Lucas Courchet,Laetitia Drago,Amanda Elineau,Lionel Guidi,Helena Hauss,Laëtitia Jalabert,Lee Karp-Boss,Rainer Kiko,Manon Laget,Fabien Lombard,Andrew McDonnell,Camille Merland,Solène Motreuil,Thelma Panaïotis,Marc Picheral,Andreas Rogge,Anya Waite,Jean-Olivier Irisson
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引用次数: 0

Abstract

Plankton and detritus are essential components of the Earth's oceans influencing biogeochemical cycles and carbon sequestration. Climate change impacts their composition and fluxes, and marine ecosystems as a whole. To improve our understanding of these changes, standardized observation methods and integrated global datasets are needed to enhance the accuracy of ecological and climate models. Here, we present a global dataset for plankton and detritus obtained by two versions (SD and HD) of the Underwater Vision Profiler 5 (UVP5). This release contains the images classified in 33 homogenized categories, as well as the metadata associated with them, reaching 3114 profiles and ca. 8 million objects acquired between 2008–2018 at global scale. The geographical distribution of the dataset is unbalanced, with the Equatorial region (30° S–30° N) being the most represented, followed by the high latitudes in the northern hemisphere and lastly the high latitudes in the Southern Hemisphere. Detritus is the most abundant category in terms of concentration (90 %) and biovolume (95 %), although its classification in different morphotypes is still not well established. Copepoda was the most abundant planktonic taxon, followed by Trichodesmium colonies. The two versions of UVP5 have different imagers, resulting in a different effective size range to analyze plankton and detritus from the images (HD objects > 600 µm, SD objects > 1 mm) and morphological properties (grey levels, etc.); however, both systems capture comparable qualitative patterns in object morphology and relative abundance across size classes, even though the absolute ranges differ. Therefore, recommendations are provided for the appropriate use of this data when conducting studies. A large number of images of plankton and detritus will be collected in the future by the UVP5, and the public availability of this dataset will help it being utilized as a training set for machine learning and being improved by the scientific community. This will reduce uncertainty by identifying previously unclassified objects and expand the classification categories, ultimately enhancing biodiversity quantification. The dataset that constitutes this first release is available on SEANOE at https://doi.org/10.17882/107583 (Nocera et al., 2025).
由水下视觉分析器5在原位成像的浮游生物和碎屑的全球一致数据库
浮游生物和碎屑是地球海洋的重要组成部分,影响生物地球化学循环和碳固存。气候变化影响了它们的组成和通量,也影响了整个海洋生态系统。为了提高我们对这些变化的认识,需要标准化的观测方法和综合的全球数据集来提高生态和气候模式的准确性。本文介绍了水下视觉分析器5 (UVP5)的两个版本(SD和HD)获得的浮游生物和碎屑的全球数据集。该版本包含33个同质化类别的图像,以及与之相关的元数据,包括2008-2018年在全球范围内获得的3114个剖面和约80万件物体。数据集的地理分布不平衡,以赤道地区(30°S-30°N)最具代表性,其次是北半球高纬度地区,最后是南半球高纬度地区。碎屑在浓度(90%)和生物体积(95%)方面是最丰富的类别,尽管其不同形态的分类仍然没有很好地建立。桡足类是最丰富的浮游类群,其次是毛藻。两种版本的UVP5具有不同的成像仪,导致从图像中分析浮游生物和碎屑的有效尺寸范围(高清对象>; 600 μ m, SD对象>; 1 mm)和形态特性(灰度等)不同;然而,这两个系统在物体形态和大小类别的相对丰度上捕获了可比较的定性模式,即使绝对范围不同。因此,在进行研究时提供了适当使用这些数据的建议。未来UVP5将收集大量的浮游生物和碎屑图像,该数据集的公开可用性将有助于将其用作机器学习的训练集,并得到科学界的改进。这将通过识别以前未分类的对象来减少不确定性,并扩大分类类别,最终增强生物多样性的量化。构成第一次发布的数据集可在SEANOE上获得https://doi.org/10.17882/107583 (Nocera et al., 2025)。
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来源期刊
Earth System Science Data
Earth System Science Data GEOSCIENCES, MULTIDISCIPLINARYMETEOROLOGY-METEOROLOGY & ATMOSPHERIC SCIENCES
CiteScore
18.00
自引率
5.30%
发文量
231
审稿时长
35 weeks
期刊介绍: Earth System Science Data (ESSD) is an international, interdisciplinary journal that publishes articles on original research data in order to promote the reuse of high-quality data in the field of Earth system sciences. The journal welcomes submissions of original data or data collections that meet the required quality standards and have the potential to contribute to the goals of the journal. It includes sections dedicated to regular-length articles, brief communications (such as updates to existing data sets), commentaries, review articles, and special issues. ESSD is abstracted and indexed in several databases, including Science Citation Index Expanded, Current Contents/PCE, Scopus, ADS, CLOCKSS, CNKI, DOAJ, EBSCO, Gale/Cengage, GoOA (CAS), and Google Scholar, among others.
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