{"title":"ML-RKIM: Physics-Informed Machine Learning for Reaction Kinetics Identification and Modeling","authors":"Paulina Portales Picazo, Navid Zobeiry","doi":"10.1021/acs.jcim.6c01936","DOIUrl":null,"url":null,"abstract":"<p>Kinetic processes\r\nplay a central role in structural transformations\r\nacross natural, engineered, and biological systems, ultimately determining\r\ntheir final properties. Traditional kinetic characterization methods\r\nare often time-consuming and resource-intensive, and require prior\r\nassumptions about the reaction mechanism. In this work, we present\r\na physics-informed machine learning framework to extract closed-form\r\nkinetic representations from time-series data without preselecting\r\na single reaction mechanism. The framework combines neural networks,\r\nphysics-informed features, and sparse regularization. The framework\r\nwas applied to a range of processes, including thermally driven reactions\r\nsuch as polymer curing and crystallization, and nonthermal processes\r\nsuch as enzymatic browning. The method identified sparse, closed-form\r\nkinetic representations while reducing reliance on a single predefined\r\nkinetic model. R<sup>2</sup> values exceeded 98% for the synthetic\r\ncases and ranged from 76% to 92% for the experimental cases. In addition,\r\na systematic ablation study evaluated robustness to noise, data availability,\r\nsampling density, incomplete measurements, and candidate function\r\nlibrary variation, and an experimental case study was included to\r\nassess the performance under realistic conditions. These results demonstrate\r\nthe potential of this approach to accelerate kinetic characterization\r\nacross polymer, food, and biomolecular processing applications, where\r\naccurate kinetic models are essential.</p>","PeriodicalId":44,"journal":{"name":"Journal of Chemical Information and Modeling ","volume":"66 19","pages":"12448–12462"},"PeriodicalIF":6.4000,"publicationDate":"2026-10-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Information and Modeling ","FirstCategoryId":"92","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.jcim.6c01936","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2026/9/22 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"CHEMISTRY, MEDICINAL","Score":null,"Total":0}
引用次数: 0
Abstract
Kinetic processes
play a central role in structural transformations
across natural, engineered, and biological systems, ultimately determining
their final properties. Traditional kinetic characterization methods
are often time-consuming and resource-intensive, and require prior
assumptions about the reaction mechanism. In this work, we present
a physics-informed machine learning framework to extract closed-form
kinetic representations from time-series data without preselecting
a single reaction mechanism. The framework combines neural networks,
physics-informed features, and sparse regularization. The framework
was applied to a range of processes, including thermally driven reactions
such as polymer curing and crystallization, and nonthermal processes
such as enzymatic browning. The method identified sparse, closed-form
kinetic representations while reducing reliance on a single predefined
kinetic model. R2 values exceeded 98% for the synthetic
cases and ranged from 76% to 92% for the experimental cases. In addition,
a systematic ablation study evaluated robustness to noise, data availability,
sampling density, incomplete measurements, and candidate function
library variation, and an experimental case study was included to
assess the performance under realistic conditions. These results demonstrate
the potential of this approach to accelerate kinetic characterization
across polymer, food, and biomolecular processing applications, where
accurate kinetic models are essential.
期刊介绍:
The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery.
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