Polynomial smoothing and curvature estimation of noisy biological surfaces with application to aortic morphology.

IF 2.5 3区 物理与天体物理 Q2 PHYSICS, FLUIDS & PLASMAS
Joseph A Pugar, Efi Efrati, Luka Pocivavsek
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引用次数: 0

Abstract

We present a polynomial-based smoothing and curvature estimation pipeline for extracting geometric descriptors from noisy manifolds produced by segmentation of biological surfaces, with application to thoracic aortic geometry from computed tomography angiography (CTA). The approach is a mesh-adapted variant of local polynomial regression: we fit low-order polynomials on Monge patches to smooth segmentation noise while preserving volume, then estimate curvatures from the same locally defined polynomials. Conceptually, our smoothing step generalizes classic Savitzky-Golay least-squares fitting to irregularly sampled surface neighborhoods in the style of Locally Estimated Scatterplot Smoothing, while the curvature step follows standard differential geometry on Monge patches. Per-facet curvatures are aggregated into scale-invariant integrated quantities including the total squared and integrated Gaussian curvatures, which serve as global shape descriptors. The result is a transparent, reproducible workflow that preserves interpretable surface features and yields physically meaningful descriptors suitable for downstream modeling. We validate on a cohort of 267 CTA scans from normal and dissected aortas. As an illustrative downstream task, we show that integrated curvature descriptors derived from our pipeline recover outcome-group separability comparable to prior analyses, while providing a richer per-facet curvature field for future modeling.

噪声生物表面的多项式平滑和曲率估计及其在主动脉形态学中的应用。
我们提出了一个基于多项式的平滑和曲率估计管道,用于从生物表面分割产生的噪声流形中提取几何描述符,并应用于计算机断层扫描血管造影(CTA)的胸主动脉几何。该方法是局部多项式回归的网格适应变体:我们在Monge patch上拟合低阶多项式以平滑分割噪声,同时保持体积,然后从相同的局部定义多项式估计曲率。从概念上讲,我们的平滑步骤以局部估计散点图平滑的方式将经典的Savitzky-Golay最小二乘拟合推广到不规则采样的表面邻域,而曲率步骤则遵循Monge patch上的标准微分几何。每个面曲率被聚合成尺度不变的积分量,包括总平方和积分高斯曲率,它们作为全局形状描述符。结果是一个透明的、可重复的工作流,它保留了可解释的表面特征,并产生了适合下游建模的物理上有意义的描述符。我们对267例正常主动脉和夹层主动脉的CTA扫描进行了验证。作为一个说明性的下游任务,我们展示了从我们的管道恢复结果群可分性中得到的集成曲率描述符,与之前的分析相媲美,同时为未来的建模提供了更丰富的每面曲率场。
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来源期刊
Physical Review E
Physical Review E PHYSICS, FLUIDS & PLASMASPHYSICS, MATHEMAT-PHYSICS, MATHEMATICAL
CiteScore
4.50
自引率
16.70%
发文量
2110
期刊介绍: Physical Review E (PRE), broad and interdisciplinary in scope, focuses on collective phenomena of many-body systems, with statistical physics and nonlinear dynamics as the central themes of the journal. Physical Review E publishes recent developments in biological and soft matter physics including granular materials, colloids, complex fluids, liquid crystals, and polymers. The journal covers fluid dynamics and plasma physics and includes sections on computational and interdisciplinary physics, for example, complex networks.
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