Multimodal graph learning for chagas disease classification.

IF 3.1 4区 医学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Gabriel Carcedo-Rodríguez, Erik Molino-Minero-Re, Jorge Perez-Gonzalez, Nidiyare Hevia-Montiel
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引用次数: 0

Abstract

The accurate classification of Chagas disease stages based on Trypanosoma cruzi infection in experimental models faces challenges due to the scarcity of data and the high dimensionality of diagnostic sources. This study proposes an architecture based on Graph Attention Networks on fully connected graphs to combine multimodal features (Electrocardiogram, Echocardiogram, Doppler, and ELISA). A Variational Graph Autoencoder was used to implement a data augmentation strategy that reduces overfitting and optimizes generalization, producing synthetic subjects with a biological covariance structure. The results demonstrate that the proposed methodology is effective compared to state-of-the-art classifiers, achieving an AUROC of 100% in the identification of infection stage through multimodal fusion and significantly optimizing performance in complex modalities such as Doppler. The pathophysiological consistency of the model's decisions was also validated using an interpretability scheme (GNNExplainer), which allowed the detection of important clinical features and established GATs as a robust method in the classification of Trypanosoma cruzi infection stages.

恰加斯病分类的多模态图学习。
实验模型中基于克氏锥虫感染的恰加斯病分期的准确分类由于数据的稀缺性和诊断源的高维性而面临挑战。本研究提出了一种基于全连接图的图注意网络架构,以结合多模态特征(心电图、超声心动图、多普勒和ELISA)。使用变分图自编码器实现数据增强策略,减少过拟合和优化泛化,生成具有生物协方差结构的合成受试者。结果表明,与最先进的分类器相比,所提出的方法是有效的,通过多模态融合在识别感染阶段方面实现了100%的AUROC,并显着优化了多普勒等复杂模式的性能。模型决策的病理生理一致性也通过可解释性方案(gnexplinterpreter)得到验证,该方案允许检测重要的临床特征,并将GATs建立为克氏锥虫感染分期分类的稳健方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Medical & Biological Engineering & Computing
Medical & Biological Engineering & Computing 医学-工程:生物医学
CiteScore
6.00
自引率
3.10%
发文量
249
审稿时长
3.5 months
期刊介绍: Founded in 1963, Medical & Biological Engineering & Computing (MBEC) continues to serve the biomedical engineering community, covering the entire spectrum of biomedical and clinical engineering. The journal presents exciting and vital experimental and theoretical developments in biomedical science and technology, and reports on advances in computer-based methodologies in these multidisciplinary subjects. The journal also incorporates new and evolving technologies including cellular engineering and molecular imaging. MBEC publishes original research articles as well as reviews and technical notes. Its Rapid Communications category focuses on material of immediate value to the readership, while the Controversies section provides a forum to exchange views on selected issues, stimulating a vigorous and informed debate in this exciting and high profile field. MBEC is an official journal of the International Federation of Medical and Biological Engineering (IFMBE).
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