Tian Yu, Qi Qin, Yumei Zhou, Mei Zhang, Qiujuan Zhang, Shilun Yang, Yinzhong Ma, Baofeng Xu, Rui Liu
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引用次数: 0
Abstract
Rupture of vulnerable carotid atherosclerotic plaques (CAPs) is a major precipitating cause of ischemic stroke. Current imaging-based risk stratification is useful for anatomical and structural assessment, but it does not readily provide noninvasive access to plaque-associated molecular information. Here, we aimed to identify and validate a noninvasive urinary biomarker of CAP instability and to explore its biological relevance. We employed a multi-stage study design integrating untargeted urinary proteomics data-independent acquisition mass spectrometry in a discovery cohort of 179 patients with systematic interrogation of plaque tissue proteomic and transcriptomic datasets. Candidate proteins were further evaluated by ELISA in an independent cohort of 225 individuals, including patients with stable or unstable CAPs and healthy controls. Cellular and tissue-level analyses included single-cell RNA sequencing re-analysis, human plaque validation by immunohistochemistry, western blotting, and immunofluorescence, as well as in vitro macrophage phenotypic assays. Urinary proteomic profiling identified 227 shared differential proteins associated with plaque instability. In the independent validation cohort, urinary ADAM-Like Decysin 1 (ADAMDEC1) was confirmed as a candidate urinary marker, showing a stepwise increase from healthy controls to stable and unstable CAPs. Urinary ADAMDEC1 showed robust discriminatory performance for unstable plaques (AUC = 0.882, 95% CI 0.822-0.941). Higher urinary ADAMDEC1 levels were associated with symptomatic status and plaque vulnerability features, while higher intraplaque ADAMDEC1 expression was associated with adverse cerebrovascular outcomes. Single-cell and human plaque analyses showed that ADAMDEC1 was enriched in inflammatory macrophage-associated plaque regions, and in vitro assays supported an association between ADAMDEC1 and pro-inflammatory macrophage polarization. Urinary ADAMDEC1 is a noninvasive biomarker associated with carotid plaque instability. Integrated tissue, single-cell, and macrophage assays support a link between ADAMDEC1 and macrophage-associated inflammatory features in vulnerable plaques.
期刊介绍:
The mission of MCP is to foster the development and applications of proteomics in both basic and translational research. MCP will publish manuscripts that report significant new biological or clinical discoveries underpinned by proteomic observations across all kingdoms of life. Manuscripts must define the biological roles played by the proteins investigated or their mechanisms of action.
The journal also emphasizes articles that describe innovative new computational methods and technological advancements that will enable future discoveries. Manuscripts describing such approaches do not have to include a solution to a biological problem, but must demonstrate that the technology works as described, is reproducible and is appropriate to uncover yet unknown protein/proteome function or properties using relevant model systems or publicly available data.
Scope:
-Fundamental studies in biology, including integrative "omics" studies, that provide mechanistic insights
-Novel experimental and computational technologies
-Proteogenomic data integration and analysis that enable greater understanding of physiology and disease processes
-Pathway and network analyses of signaling that focus on the roles of post-translational modifications
-Studies of proteome dynamics and quality controls, and their roles in disease
-Studies of evolutionary processes effecting proteome dynamics, quality and regulation
-Chemical proteomics, including mechanisms of drug action
-Proteomics of the immune system and antigen presentation/recognition
-Microbiome proteomics, host-microbe and host-pathogen interactions, and their roles in health and disease
-Clinical and translational studies of human diseases
-Metabolomics to understand functional connections between genes, proteins and phenotypes