Investigating the potential mechanism of bisphenols on neurodegeneration through network toxicology and molecular docking.

NAM journal Pub Date : 2025-08-19 eCollection Date: 2025-01-01 DOI:10.1016/j.namjnl.2025.100044
Hui Liu, Mengyao Tang, Luqiao Che, Jianing Lu, Liping Zhang
{"title":"Investigating the potential mechanism of bisphenols on neurodegeneration through network toxicology and molecular docking.","authors":"Hui Liu, Mengyao Tang, Luqiao Che, Jianing Lu, Liping Zhang","doi":"10.1016/j.namjnl.2025.100044","DOIUrl":null,"url":null,"abstract":"<p><p>This study aims to elucidate the mechanisms underlying bisphenols (BPs)-induced neurodegeneration and their contribution to neurodegenerative diseases. Focusing on four major disorders-Alzheimer's Disease, Parkinson's Disease, Amyotrophic Lateral Sclerosis, and Huntington's Disease-we systematically examined key molecular pathways potentially perturbed by BPs during disease progression. Preliminary toxicological profiling of four representative BPs was conducted using ProTox-3.0, ADMETlab 3.0, and the Xundrug database. Subsequent target identification involved integrated analyses of multiple bioinformatics resources, including CHEMBL and STITCH. Protein-protein interaction networks constructed with STRING and Cytoscape identified core targets such as HSP90AA1, ESR1, BCL2, and PTGS2. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses further revealed critical biological processes, including enzyme binding and heme binding, as well as key pathways associated with BPs neurotoxicity, such as chemical carcinogenesis-receptor activation, chemical carcinogenesis-DNA adducts, and arachidonic acid metabolism. Molecular docking studies demonstrated strong binding affinities between BPs and core targets, supported by low free energy values. Molecular dynamics simulations further validated stable binding conformations and dynamic interactions. Additionally, we analyzed regulatory networks of mRNA-miRNA-lncRNA interactions for core targets. In summary, our findings establish a novel multi-target and multi-pathway framework for BPs-induced neurodegeneration, revealing synergistic effects of pathways including carcinogenic signaling activation and metabolic dysregulation. This study advances understanding of environmental neurotoxicity and provides a foundation for developing preventive strategies against neurodegenerative diseases.</p>","PeriodicalId":520522,"journal":{"name":"NAM journal","volume":"1 ","pages":"100044"},"PeriodicalIF":0.0000,"publicationDate":"2025-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13289034/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"NAM journal","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1016/j.namjnl.2025.100044","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

This study aims to elucidate the mechanisms underlying bisphenols (BPs)-induced neurodegeneration and their contribution to neurodegenerative diseases. Focusing on four major disorders-Alzheimer's Disease, Parkinson's Disease, Amyotrophic Lateral Sclerosis, and Huntington's Disease-we systematically examined key molecular pathways potentially perturbed by BPs during disease progression. Preliminary toxicological profiling of four representative BPs was conducted using ProTox-3.0, ADMETlab 3.0, and the Xundrug database. Subsequent target identification involved integrated analyses of multiple bioinformatics resources, including CHEMBL and STITCH. Protein-protein interaction networks constructed with STRING and Cytoscape identified core targets such as HSP90AA1, ESR1, BCL2, and PTGS2. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses further revealed critical biological processes, including enzyme binding and heme binding, as well as key pathways associated with BPs neurotoxicity, such as chemical carcinogenesis-receptor activation, chemical carcinogenesis-DNA adducts, and arachidonic acid metabolism. Molecular docking studies demonstrated strong binding affinities between BPs and core targets, supported by low free energy values. Molecular dynamics simulations further validated stable binding conformations and dynamic interactions. Additionally, we analyzed regulatory networks of mRNA-miRNA-lncRNA interactions for core targets. In summary, our findings establish a novel multi-target and multi-pathway framework for BPs-induced neurodegeneration, revealing synergistic effects of pathways including carcinogenic signaling activation and metabolic dysregulation. This study advances understanding of environmental neurotoxicity and provides a foundation for developing preventive strategies against neurodegenerative diseases.

通过网络毒理学和分子对接研究双酚类物质对神经变性的潜在作用机制。
本研究旨在阐明双酚(bp)诱导的神经退行性疾病的机制及其在神经退行性疾病中的作用。针对四种主要疾病——阿尔茨海默病、帕金森病、肌萎缩侧索硬化症和亨廷顿病,我们系统地检查了在疾病进展过程中可能被bp干扰的关键分子途径。采用ProTox-3.0、ADMETlab 3.0和xdrug数据库对4种代表性bp进行初步毒理学分析。随后的靶标鉴定涉及多种生物信息学资源的综合分析,包括CHEMBL和STITCH。由STRING和Cytoscape构建的蛋白相互作用网络鉴定出HSP90AA1、ESR1、BCL2和PTGS2等核心靶点。基因本体和京都基因与基因组百科分析进一步揭示了bp神经毒性的关键生物学过程,包括酶结合和血红素结合,以及化学致癌-受体激活、化学致癌- dna加合物和花生四烯酸代谢等与bp神经毒性相关的关键途径。分子对接研究表明,bp与核心靶点之间具有较强的结合亲和力,这得到了低自由能值的支持。分子动力学模拟进一步验证了稳定的结合构象和动态相互作用。此外,我们分析了核心靶点mRNA-miRNA-lncRNA相互作用的调控网络。总之,我们的研究结果为bp诱导的神经变性建立了一个新的多靶点和多通路框架,揭示了致癌信号激活和代谢失调等途径的协同作用。本研究促进了对环境神经毒性的认识,并为制定预防神经退行性疾病的策略提供了基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信
小红书