Computational insights into oxysterols: MD and DFT applications in pharmaceutical research.

Jan Kobierski, Michał Świątek, Wojciech Jawień
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Abstract

Oxysterols, the oxidized derivatives of cholesterol, are biologically active molecules involved in a wide range of physiological and pathological processes. Small structural changes in the cholesterol backbone (such as additional hydroxyl or keto groups on the sterol rings or side chain) dramatically alter their biological effects, ranging from beneficial roles in cholesterol homeostasis and antiviral acivity to harmful contributions to diseases like atherosclerosis, neurodegeneration, and cancer. Molecular dynamics (MD) simulations and density functional theory (DFT) calculations have emerged as powerful tools to investigate these molecules at an atomic level. By complementing experimental studies, computational approaches reveal how oxysterols interact with membrane lipids, providing mechanistic insight into their function. This review highlights key findings from MD and DFT studies on various oxysterols - including 7-hydroxycholesterol epimers, 7-ketocholesterol, 22-hydroxycholesterol epimers, 24(S)-, 25- and 27-hydroxycholesterol - in the context of pharmaceutical and medical research. We discuss how these methods uncovered differences in orientation, hydration, and intermolecular interactions of oxysterols in model membranes, lipid rafts, and complexes, explaining phenomena such as membrane domain destabilization or stabilization, rapid transbilayer "flip-flop" translocation, and stereochemistry-dependent biological activity. Understanding these molecular details is crucial for pharmacists and medical researchers, as it connects oxysterol structure-function relationships to their roles as potential biomarkers, therapeutic targets, or bioactive compounds involved in disease pathophysiology. Computational chemistry thus provides a valuable complement to experimental pharmacology, enabling the prediction of oxysterol behavior in biological systems.

对氧化甾醇的计算见解:MD和DFT在药物研究中的应用。
氧甾醇是胆固醇的氧化衍生物,是一种生物活性分子,参与了广泛的生理和病理过程。胆固醇主干的微小结构变化(如固醇环或侧链上额外的羟基或酮基)显著地改变了它们的生物效应,从有益的胆固醇稳态和抗病毒活性到有害的疾病,如动脉粥样硬化、神经变性和癌症。分子动力学(MD)模拟和密度泛函理论(DFT)计算已经成为在原子水平上研究这些分子的有力工具。通过补充实验研究,计算方法揭示了氧化甾醇如何与膜脂相互作用,为其功能提供了机制见解。本文综述了在制药和医学研究的背景下,MD和DFT对各种氧甾醇(包括7-羟基胆固醇外显体、7-酮胆固醇、22-羟基胆固醇外显体、24(S)-、25-和27-羟基胆固醇)的研究的主要发现。我们讨论了这些方法如何揭示模型膜、脂筏和复合物中氧甾醇的取向、水合作用和分子间相互作用的差异,解释了膜结构域不稳定或稳定、快速跨双层“翻转”易位和立体化学依赖的生物活性等现象。了解这些分子细节对药剂师和医学研究人员至关重要,因为它将氧甾醇的结构-功能关系与它们作为潜在生物标志物、治疗靶点或参与疾病病理生理学的生物活性化合物的作用联系起来。因此,计算化学为实验药理学提供了有价值的补充,使预测生物系统中的氧化甾醇行为成为可能。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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