{"title":"Crystal structure and Hirshfeld surface analysis of <i>N</i>-(1<i>H</i>-benzo[<i>d</i>]imidazol-2-yl)acetamide.","authors":"Akmaljon G Tojiboev, Rasul Okmanov, Asqar Abdurazakov, Sarvar Saidov, Elyor Rakhmatov, Abduakhad Kodirov, Burkhon Elmuradov","doi":"10.1107/S2056989026004196","DOIUrl":null,"url":null,"abstract":"<p><p>The crystal structure of the title com-pound, C<sub>9</sub>H<sub>9</sub>N<sub>3</sub>O, was refined using non-spherical scattering factors. This quantum crystallographic approach provided enhanced precision for the H-atom positions and a refined description of the electron density. The asymmetric unit com-prises two mol-ecules (<i>Z</i>' = 2) exhibiting high conformational similarity (r.m.s. deviation between the mol-ecules is 0.083 Å). In the crystal, mol-ecules form pseudocentrosymmetric dimers <i>via</i> inter-molecular N-H⋯O and N-H⋯N hy-dro-gen bonds. These units are further linked into supra-molecular layers characterized by <i>D</i>(1), <i>C</i> <sub>2</sub> <sup>2</sup>(8), <i>C</i> <sub>2</sub> <sup>2</sup>(10), <i>R</i> <sub>2</sub> <sup>2</sup>(8) and <i>R</i> <sub>2</sub> <sup>2</sup>(12) graph-set motifs. The packing is mainly consolidated by C-H⋯π inter-actions. Hirshfeld surface analysis and two-dimensional fingerprint plots were used to qu-antify the supra-molecular assembly, identifying H⋯H (45%), C⋯H/H⋯C (20.8%), N⋯H/H⋯N (12.2%) and O⋯H/H⋯O (11.5%) contacts as the primary contributors to the crystal packing.</p>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"82 Pt 5","pages":"521-524"},"PeriodicalIF":0.6000,"publicationDate":"2026-04-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13148197/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Acta Crystallographica Section E: Crystallographic Communications","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1107/S2056989026004196","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2026/5/1 0:00:00","PubModel":"eCollection","JCR":"Q4","JCRName":"CRYSTALLOGRAPHY","Score":null,"Total":0}
引用次数: 0
Abstract
The crystal structure of the title com-pound, C9H9N3O, was refined using non-spherical scattering factors. This quantum crystallographic approach provided enhanced precision for the H-atom positions and a refined description of the electron density. The asymmetric unit com-prises two mol-ecules (Z' = 2) exhibiting high conformational similarity (r.m.s. deviation between the mol-ecules is 0.083 Å). In the crystal, mol-ecules form pseudocentrosymmetric dimers via inter-molecular N-H⋯O and N-H⋯N hy-dro-gen bonds. These units are further linked into supra-molecular layers characterized by D(1), C22(8), C22(10), R22(8) and R22(12) graph-set motifs. The packing is mainly consolidated by C-H⋯π inter-actions. Hirshfeld surface analysis and two-dimensional fingerprint plots were used to qu-antify the supra-molecular assembly, identifying H⋯H (45%), C⋯H/H⋯C (20.8%), N⋯H/H⋯N (12.2%) and O⋯H/H⋯O (11.5%) contacts as the primary contributors to the crystal packing.
期刊介绍:
Acta Crystallographica Section E: Crystallographic Communications is the IUCr''s open-access structural communications journal. It provides a fast, simple and easily accessible publication mechanism for crystal structure determinations of inorganic, metal-organic and organic compounds. The electronic submission, validation, refereeing and publication facilities of the journal ensure rapid and high-quality publication of fully validated structures. The primary article category is Research Communications; these are peer-reviewed articles describing one or more structure determinations with appropriate discussion of the science.