An interpretable machine learning framework for prediction of adsorption energies and generative design of active sites on arbitrary catalysts.

IF 3.1 3区 化学 Q2 CHEMISTRY, PHYSICAL
Matthew S Johnson, Richard H West, Judit Zádor
{"title":"An interpretable machine learning framework for prediction of adsorption energies and generative design of active sites on arbitrary catalysts.","authors":"Matthew S Johnson, Richard H West, Judit Zádor","doi":"10.1039/d5fd00143a","DOIUrl":null,"url":null,"abstract":"<p><p>We present a highly interpretable and efficient machine learning framework for predictive and generative modeling of adsorption energies on surfaces using subgraph isomorphic decision trees (SIDTs). Extracting graph representations of 344 756 relaxed geometries and their associated adsorption energies from the OC20 database, we used them to train a 24 777-node SIDT that achieves 0.36 eV MDAE, 0.54 eV MAE, and 0.82 eV RMSE. We then developed and implemented novel techniques to use SIDTs as generative models enabling efficient catalyst optimization for arbitrary objective functions and constraints as a function of the adsorption energies and prediction uncertainties of multiple adsorbates and the catalyst structure itself. In particular, our SIDT provides substructure representations of the subdistributions of adsorption energy, rather than mere samples from the subdistributions, as is commonly done in traditional generative modeling. We show how this can be exploited for efficient and interpretable catalyst active site design in two examples. For the ammonia decomposition reaction sequence, we show that we are able to use our generative techniques to minimize the overall barrier height of the sequence generating catalyst substructures predicted to decrease the overall barrier from 2.7 eV on Pt(111) to 0.4 eV. We also discuss how we can exploit the accurate SIDT uncertainties and the interpretability of the SIDT to identify regions of chemical space that are in need of improved coverage and might be improved using active-learning schemes.</p>","PeriodicalId":76,"journal":{"name":"Faraday Discussions","volume":" ","pages":"386-404"},"PeriodicalIF":3.1000,"publicationDate":"2026-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Faraday Discussions","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1039/d5fd00143a","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

Abstract

We present a highly interpretable and efficient machine learning framework for predictive and generative modeling of adsorption energies on surfaces using subgraph isomorphic decision trees (SIDTs). Extracting graph representations of 344 756 relaxed geometries and their associated adsorption energies from the OC20 database, we used them to train a 24 777-node SIDT that achieves 0.36 eV MDAE, 0.54 eV MAE, and 0.82 eV RMSE. We then developed and implemented novel techniques to use SIDTs as generative models enabling efficient catalyst optimization for arbitrary objective functions and constraints as a function of the adsorption energies and prediction uncertainties of multiple adsorbates and the catalyst structure itself. In particular, our SIDT provides substructure representations of the subdistributions of adsorption energy, rather than mere samples from the subdistributions, as is commonly done in traditional generative modeling. We show how this can be exploited for efficient and interpretable catalyst active site design in two examples. For the ammonia decomposition reaction sequence, we show that we are able to use our generative techniques to minimize the overall barrier height of the sequence generating catalyst substructures predicted to decrease the overall barrier from 2.7 eV on Pt(111) to 0.4 eV. We also discuss how we can exploit the accurate SIDT uncertainties and the interpretability of the SIDT to identify regions of chemical space that are in need of improved coverage and might be improved using active-learning schemes.

一个可解释的机器学习框架,用于预测吸附能和任意催化剂上活性位点的生成设计。
我们提出了一个高度可解释和高效的机器学习框架,用于使用子图同构决策树(sidt)对表面上的吸附能进行预测和生成建模。从OC20数据库中提取344 756个松弛几何图形及其相关吸附能的图表示,我们使用它们来训练24 777个节点的SIDT,其MDAE为0.36 eV, MAE为0.54 eV, RMSE为0.82 eV。然后,我们开发并实施了新的技术,使用sidt作为生成模型,实现了针对任意目标函数和约束(吸附能和多种吸附物的预测不确定性的函数)以及催化剂结构本身的有效催化剂优化。特别是,我们的SIDT提供了吸附能子分布的子结构表示,而不仅仅是来自子分布的样本,就像传统生成模型中通常做的那样。我们在两个例子中展示了如何利用这一点进行高效和可解释的催化剂活性位点设计。对于氨分解反应序列,我们表明我们能够使用生成技术来最小化生成催化剂子结构序列的总势垒高度,预计将把Pt(111)上的总势垒从2.7 eV降低到0.4 eV。我们还讨论了如何利用准确的SIDT不确定性和SIDT的可解释性来确定需要改进覆盖范围的化学空间区域,并可能使用主动学习方案进行改进。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Faraday Discussions
Faraday Discussions 化学-物理化学
自引率
0.00%
发文量
259
期刊介绍: Discussion summary and research papers from discussion meetings that focus on rapidly developing areas of physical chemistry and its interfaces
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信
小红书