Sk Faisal Ahmed, Md Shah Paran, Md Masudur Rahman Munna, Enam Ahmed, Upom Majumder, Monisha Rahmatullah, Md Zulfekar Ali
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引用次数: 0
Abstract
Dabie bandavirus (DBV), also called severe fever with thrombocytopenia syndrome virus (SFTSV), is a tick-borne virus that leads to a serious illness with high fever, low platelets, bleeding risks, and organ damage. Death rates can reach 5% to 30% in affected areas like China, South Korea, and Japan, where cases continue to rise. No approved vaccines or specific treatments are available, prompting the World Health Organization to mark it as a priority emerging infectious disease. This in silico study designs a multi-epitope mRNA vaccine candidate targeting the virus's membrane glycoprotein. After reviewing 1042 virus sequences, 9 cytotoxic T-cell (cytotoxic T lymphocyte [CTL]), 6 helper T-cell (helper T lymphocyte [HTL]), and 5 B-cell epitopes were chosen for their high conservation, predicted antigenicity, safety (non-toxic, low allergenicity), and lack of similarity to human proteins, achieving 94.77% global population coverage. The construct included beta-defensin-3 as an adjuvant. Computational predictions indicated favorable features: structural stability, potential binding to immune receptors (Toll-like receptor 3 [TLR3] and Toll-like receptor 4 [TLR4]), consistent behavior in molecular dynamics simulations (100 ns), encouraging patterns in immune response modeling, and good codon optimization for possible expression. These results are hypothesis-generating and based solely on in silico tools and require experimental validation, including in vitro studies, immunogenicity tests, and animal challenge models to assess any real-world potential.
大别班达病毒(DBV),也称为发热伴血小板减少综合征病毒(SFTSV),是一种蜱传病毒,可导致高烧、血小板减少、出血风险和器官损伤等严重疾病。在中国、韩国和日本等受影响地区,死亡率可达5%至30%,这些地区的病例仍在增加。目前还没有获得批准的疫苗或专门的治疗方法,这促使世界卫生组织(World Health Organization)将其列为优先考虑的新兴传染病。本计算机研究设计了一种针对病毒膜糖蛋白的多表位mRNA候选疫苗。在回顾了1042个病毒序列后,选择了9个细胞毒性T细胞(cytotoxic T lymphocyte [CTL])、6个辅助T细胞(helper T lymphocyte [HTL])和5个b细胞表位,因为它们具有高度保守性、预测抗原性、安全性(无毒、低致敏性)和与人类蛋白缺乏相似性,达到了94.77%的全球人群覆盖率。该结构包括β -防御素-3作为佐剂。计算预测显示了有利的特征:结构稳定性,与免疫受体(toll样受体3 [TLR3]和toll样受体4 [TLR4])的潜在结合,分子动力学模拟(100 ns)中的一致行为,免疫反应建模中的令人鼓舞的模式,以及可能表达的良好密码子优化。这些结果是假设生成的,完全基于计算机工具,需要实验验证,包括体外研究、免疫原性测试和动物挑战模型,以评估任何现实世界的潜力。
期刊介绍:
Bioinformatics and Biology Insights is an open access, peer-reviewed journal that considers articles on bioinformatics methods and their applications which must pertain to biological insights. All papers should be easily amenable to biologists and as such help bridge the gap between theories and applications.