Clustering-based low-rank matrix approximation for multimodal medical image compression.

IF 7.9 3区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Sisipho Hamlomo, Marcellin Atemkeng
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引用次数: 0

Abstract

Medical images are inherently high-resolution and contain locally varying structures that are crucial for diagnosis. Efficient compression of such data must therefore preserve diagnostic fidelity while minimizing redundancy. Low-rank matrix approximation (LoRMA) techniques have shown strong potential for image compression by capturing global correlations; however, they often fail to adapt to local structural variations across regions of interest, i.e., tumor areas or other diagnostically significant regions. To address these limitations, we introduce an adaptive LoRMA, which partitions a medical image into overlapping patches, groups structurally similar patches into several clusters using k-means, and performs SVD within each cluster. We derive the overall compression factor accounting for patch overlap and analyze how patch size influences compression efficiency and computational cost. While the proposed adaptive LoRMA method is applicable to any data exhibiting high local variation, we focus on medical imaging due to its pronounced local variability. We evaluate and compare our adaptive LoRMA against global SVD across four imaging modalities: MRI, ultrasound, CT scan, and chest X-ray. An ablation study against block-based SVD is further conducted to isolate the contribution of similarity-based clustering, and a contextual comparison with JPEG2000 is included to situate the proposed approach within established medical image compression frameworks. Results demonstrate that adaptive LoRMA effectively preserves structural integrity, edge details, and diagnostic relevance, as measured by average peak signal-to-noise ratio (PSNR), average structural similarity index (SSIM), average mean squared error (MSE), average intersection over union (IoU), and edge preservation index (EPI). Adaptive LoRMA significantly minimizes block artifacts and residual errors, particularly in pathological regions, consistently outperforming global SVD in terms of PSNR, SSIM, IoU, EPI, and achieving lower MSE. Adaptive LoRMA prioritizes clinically salient regions while allowing aggressive compression in non-critical regions, optimizing storage efficiency. Although adaptive LoRMA requires higher processing time, its diagnostic fidelity justifies the overhead for high-compression applications.

基于聚类的低秩矩阵逼近多模态医学图像压缩。
医学图像本质上是高分辨率的,并且包含对诊断至关重要的局部变化结构。因此,这种数据的有效压缩必须在保持诊断保真度的同时尽量减少冗余。低秩矩阵近似(LoRMA)技术通过捕获全局相关性显示出强大的图像压缩潜力;然而,它们往往不能适应感兴趣区域的局部结构变化,即肿瘤区域或其他诊断上重要的区域。为了解决这些限制,我们引入了一种自适应LoRMA,它将医学图像划分为重叠的小块,使用k-means将结构相似的小块分成几个簇,并在每个簇内执行SVD。我们推导了考虑补丁重叠的整体压缩因子,并分析了补丁大小对压缩效率和计算成本的影响。虽然提出的自适应LoRMA方法适用于任何表现出高度局部变化的数据,但由于其明显的局部变异性,我们将重点放在医学成像上。我们通过MRI、超声、CT扫描和胸部x线等四种成像方式,评估并比较了自适应LoRMA与全局SVD的差异。进一步开展了针对基于块的SVD的消融研究,以隔离基于相似性的聚类的贡献,并与JPEG2000进行了上下文比较,将所提出的方法置于已建立的医学图像压缩框架中。结果表明,通过平均峰值信噪比(PSNR)、平均结构相似性指数(SSIM)、平均均方误差(MSE)、平均交联(IoU)和边缘保存指数(EPI)来衡量,自适应LoRMA有效地保留了结构完整性、边缘细节和诊断相关性。自适应LoRMA显著地减少了块伪像和残留误差,特别是在病理区域,在PSNR、SSIM、IoU、EPI方面始终优于全局SVD,并实现了更低的MSE。自适应LoRMA优先考虑临床突出区域,同时允许对非关键区域进行积极压缩,优化存储效率。尽管自适应LoRMA需要更高的处理时间,但它的诊断保真度证明了高压缩应用程序的开销是合理的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Biodata Mining
Biodata Mining MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
7.90
自引率
0.00%
发文量
28
审稿时长
23 weeks
期刊介绍: BioData Mining is an open access, open peer-reviewed journal encompassing research on all aspects of data mining applied to high-dimensional biological and biomedical data, focusing on computational aspects of knowledge discovery from large-scale genetic, transcriptomic, genomic, proteomic, and metabolomic data. Topical areas include, but are not limited to: -Development, evaluation, and application of novel data mining and machine learning algorithms. -Adaptation, evaluation, and application of traditional data mining and machine learning algorithms. -Open-source software for the application of data mining and machine learning algorithms. -Design, development and integration of databases, software and web services for the storage, management, retrieval, and analysis of data from large scale studies. -Pre-processing, post-processing, modeling, and interpretation of data mining and machine learning results for biological interpretation and knowledge discovery.
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