{"title":"Modeling reveals temperature compensation and entrainment in the peroxiredoxin-based redox oscillator as an ancient circadian timekeeper.","authors":"Xuesong Luo, Qi Ouyang, Hongli Wang","doi":"10.1088/1478-3975/ae51fe","DOIUrl":null,"url":null,"abstract":"<p><p>Peroxiredoxins (PRXs) are antioxidant enzymes that exhibit ∼24 h redox-state oscillations across diverse life forms. These non-transcriptional rhythms operate independently of the canonical transcription-translation feedback loops, suggesting an ancient, conserved timekeeping mechanism. However, whether this redox oscillator meets the core circadian criteria-entrainment and temperature compensation-remains a key question. To address this, we developed and calibrated a mathematical model of the mitochondrial PRX/ sulfiredoxin/thioredoxin redox cycle using physiologically meaningful parameters. The model quantitatively reproduced experimental redox oscillations in<i>A. thaliana, D. melanogaster</i>, and<i>M. musculus</i>. Simulations revealed that the PRX redox oscillator possesses both temperature-compensated periodicity and the capacity for entrainment by periodic thermal and oxidative signals, thereby fulfilling the core criteria of a circadian clock. The inverse angular speed, when integrated over the closed orbit, is largely temperature-invariant, thus providing a mathematical basis for the observed period stability. The calculated phase response curves, which show phase-dependent shifts, together with the broad Arnold tongue for 1:1 resonance, demonstrate a substantial entrainment range that enables the internal rhythm to robustly lock onto periodic environmental Zeitgebers.</p>","PeriodicalId":20207,"journal":{"name":"Physical biology","volume":" ","pages":""},"PeriodicalIF":1.5000,"publicationDate":"2026-03-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Physical biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1088/1478-3975/ae51fe","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Peroxiredoxins (PRXs) are antioxidant enzymes that exhibit ∼24 h redox-state oscillations across diverse life forms. These non-transcriptional rhythms operate independently of the canonical transcription-translation feedback loops, suggesting an ancient, conserved timekeeping mechanism. However, whether this redox oscillator meets the core circadian criteria-entrainment and temperature compensation-remains a key question. To address this, we developed and calibrated a mathematical model of the mitochondrial PRX/ sulfiredoxin/thioredoxin redox cycle using physiologically meaningful parameters. The model quantitatively reproduced experimental redox oscillations inA. thaliana, D. melanogaster, andM. musculus. Simulations revealed that the PRX redox oscillator possesses both temperature-compensated periodicity and the capacity for entrainment by periodic thermal and oxidative signals, thereby fulfilling the core criteria of a circadian clock. The inverse angular speed, when integrated over the closed orbit, is largely temperature-invariant, thus providing a mathematical basis for the observed period stability. The calculated phase response curves, which show phase-dependent shifts, together with the broad Arnold tongue for 1:1 resonance, demonstrate a substantial entrainment range that enables the internal rhythm to robustly lock onto periodic environmental Zeitgebers.
期刊介绍:
Physical Biology publishes articles in the broad interdisciplinary field bridging biology with the physical sciences and engineering. This journal focuses on research in which quantitative approaches – experimental, theoretical and modeling – lead to new insights into biological systems at all scales of space and time, and all levels of organizational complexity.
Physical Biology accepts contributions from a wide range of biological sub-fields, including topics such as:
molecular biophysics, including single molecule studies, protein-protein and protein-DNA interactions
subcellular structures, organelle dynamics, membranes, protein assemblies, chromosome structure
intracellular processes, e.g. cytoskeleton dynamics, cellular transport, cell division
systems biology, e.g. signaling, gene regulation and metabolic networks
cells and their microenvironment, e.g. cell mechanics and motility, chemotaxis, extracellular matrix, biofilms
cell-material interactions, e.g. biointerfaces, electrical stimulation and sensing, endocytosis
cell-cell interactions, cell aggregates, organoids, tissues and organs
developmental dynamics, including pattern formation and morphogenesis
physical and evolutionary aspects of disease, e.g. cancer progression, amyloid formation
neuronal systems, including information processing by networks, memory and learning
population dynamics, ecology, and evolution
collective action and emergence of collective phenomena.