Modeling reveals temperature compensation and entrainment in the peroxiredoxin-based redox oscillator as an ancient circadian timekeeper.

IF 1.5 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Xuesong Luo, Qi Ouyang, Hongli Wang
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引用次数: 0

Abstract

Peroxiredoxins (PRXs) are antioxidant enzymes that exhibit ∼24 h redox-state oscillations across diverse life forms. These non-transcriptional rhythms operate independently of the canonical transcription-translation feedback loops, suggesting an ancient, conserved timekeeping mechanism. However, whether this redox oscillator meets the core circadian criteria-entrainment and temperature compensation-remains a key question. To address this, we developed and calibrated a mathematical model of the mitochondrial PRX/ sulfiredoxin/thioredoxin redox cycle using physiologically meaningful parameters. The model quantitatively reproduced experimental redox oscillations inA. thaliana, D. melanogaster, andM. musculus. Simulations revealed that the PRX redox oscillator possesses both temperature-compensated periodicity and the capacity for entrainment by periodic thermal and oxidative signals, thereby fulfilling the core criteria of a circadian clock. The inverse angular speed, when integrated over the closed orbit, is largely temperature-invariant, thus providing a mathematical basis for the observed period stability. The calculated phase response curves, which show phase-dependent shifts, together with the broad Arnold tongue for 1:1 resonance, demonstrate a substantial entrainment range that enables the internal rhythm to robustly lock onto periodic environmental Zeitgebers.

模型揭示了温度补偿和携带在过氧化物还原素为基础的氧化还原振荡器作为一个古老的昼夜节律计时器。
过氧化物氧化酶(PRXs)是一种抗氧化酶,在不同的生命形式中表现出24小时的氧化还原状态振荡。这些非转录节律独立于典型的转录-翻译反馈回路,表明存在一种古老的、保守的计时机制。然而,这种氧化还原振荡器是否满足核心昼夜节律标准-携带和温度补偿仍然是一个关键问题。为了解决这个问题,我们使用生理学上有意义的参数开发并校准了线粒体PRX/SRX/TRX氧化还原循环的数学模型。该模型定量再现了拟南拟南、黑腹拟南和肌肉拟南的实验氧化还原振荡。模拟结果表明,PRX氧化还原振荡器既具有温度补偿的周期性,又具有周期性热信号和氧化信号的携带能力,从而满足生物钟的核心标准。当在封闭轨道上积分时,逆角速度在很大程度上是温度不变的,从而为观测到的周期稳定性提供了数学基础。计算出的相位响应曲线显示了相位相关的位移,加上1:1共振的宽阿诺德舌,显示了一个实质性的夹带范围,使内部节奏能够牢固地锁定周期性环境授时因子。意义:我们的研究结果表明,过氧化物还氧蛋白氧化还原振荡器符合生物钟的标准:它可以被外部信号所引导,其周期性是温度补偿的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Physical biology
Physical biology 生物-生物物理
CiteScore
4.20
自引率
0.00%
发文量
50
审稿时长
3 months
期刊介绍: Physical Biology publishes articles in the broad interdisciplinary field bridging biology with the physical sciences and engineering. This journal focuses on research in which quantitative approaches – experimental, theoretical and modeling – lead to new insights into biological systems at all scales of space and time, and all levels of organizational complexity. Physical Biology accepts contributions from a wide range of biological sub-fields, including topics such as: molecular biophysics, including single molecule studies, protein-protein and protein-DNA interactions subcellular structures, organelle dynamics, membranes, protein assemblies, chromosome structure intracellular processes, e.g. cytoskeleton dynamics, cellular transport, cell division systems biology, e.g. signaling, gene regulation and metabolic networks cells and their microenvironment, e.g. cell mechanics and motility, chemotaxis, extracellular matrix, biofilms cell-material interactions, e.g. biointerfaces, electrical stimulation and sensing, endocytosis cell-cell interactions, cell aggregates, organoids, tissues and organs developmental dynamics, including pattern formation and morphogenesis physical and evolutionary aspects of disease, e.g. cancer progression, amyloid formation neuronal systems, including information processing by networks, memory and learning population dynamics, ecology, and evolution collective action and emergence of collective phenomena.
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