Fast Algorithms for Computing Jaro Similarity.

IF 1.3 4区 生物学 Q4 BIOCHEMICAL RESEARCH METHODS
Joyanta Basak, Nidhibahen Shah, Kenneth Haase, Anup Mathur, Krista Park, Rebecca Steorts, Daniel Weinberg, Sartaj Sahni, Sanguthevar Rajasekaran
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引用次数: 0

Abstract

The Jaro and Jaro-Winkler similarity measures are fundamental tools for character-based string comparison, with widespread use in applications such as record linkage, entity resolution, and natural language processing. Although their accuracy in capturing typographical and transpositional errors has made them popular, traditional implementations suffer from high computational cost, especially when applied to large datasets. Previously, we proposed a Jaro similarity algorithm that reduces the time complexity from quadratic to linear. The proposed linear time algorithm can compute the Jaro similarity between two strings significantly faster if the strings are sufficiently long. In this article, we introduce enhanced algorithms for computing both Jaro and Jaro-Winkler similarity that improve the runtime, including in handling shorter strings. Furthermore, we propose some techniques to drastically reduce the computing time for the case where a set of strings is repeatedly compared among themselves, making the algorithms particularly well-suited for large-scale record linkage tasks.

计算Jaro相似度的快速算法。
Jaro和Jaro- winkler相似性度量是基于字符的字符串比较的基本工具,广泛用于记录链接、实体解析和自然语言处理等应用程序。尽管它们在捕获排版和换位错误方面的准确性使它们很受欢迎,但传统的实现存在计算成本高的问题,特别是在应用于大型数据集时。在此之前,我们提出了一种Jaro相似度算法,将时间复杂度从二次型降低到线性型。如果字符串足够长,所提出的线性时间算法可以显著加快计算两个字符串之间的Jaro相似度。在本文中,我们将介绍用于计算Jaro和Jaro- winkler相似度的增强算法,这些算法可以改善运行时,包括处理较短的字符串。此外,我们提出了一些技术来大大减少一组字符串之间反复比较的情况下的计算时间,使算法特别适合大规模的记录链接任务。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Computational Biology
Journal of Computational Biology 生物-计算机:跨学科应用
CiteScore
3.60
自引率
5.90%
发文量
113
审稿时长
6-12 weeks
期刊介绍: Journal of Computational Biology is the leading peer-reviewed journal in computational biology and bioinformatics, publishing in-depth statistical, mathematical, and computational analysis of methods, as well as their practical impact. Available only online, this is an essential journal for scientists and students who want to keep abreast of developments in bioinformatics. Journal of Computational Biology coverage includes: -Genomics -Mathematical modeling and simulation -Distributed and parallel biological computing -Designing biological databases -Pattern matching and pattern detection -Linking disparate databases and data -New tools for computational biology -Relational and object-oriented database technology for bioinformatics -Biological expert system design and use -Reasoning by analogy, hypothesis formation, and testing by machine -Management of biological databases
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