Synthesis, spectroscopic characterization, and multiscale computational ınvestigation of a novel 1,2,4-triazole derivative targeting AChE, BChE, and COX enzymes
Ahmet Harmankaya, Hilal Medetalibeyoğlu, Abdurrahman Atalay, Ahmet Buğra Ortaakarsu, Sevda Manap, Ebru Koca, Çiğdem Yıldız, Nejdet Köçek, Haydar Yüksek
{"title":"Synthesis, spectroscopic characterization, and multiscale computational ınvestigation of a novel 1,2,4-triazole derivative targeting AChE, BChE, and COX enzymes","authors":"Ahmet Harmankaya, Hilal Medetalibeyoğlu, Abdurrahman Atalay, Ahmet Buğra Ortaakarsu, Sevda Manap, Ebru Koca, Çiğdem Yıldız, Nejdet Köçek, Haydar Yüksek","doi":"10.1007/s11224-025-02610-7","DOIUrl":null,"url":null,"abstract":"<div><p>In this study, a new 1,2,4-triazole derivative, 4-(((3-ethyl-5-oxo-1,5-dihydro-4<i>H</i>-1,2,4-triazol-4-yl)imino)methyl)-2-methoxyphenyl benzoate (<b>MPB</b>), was synthesized and structurally confirmed using FTIR, UV–Vis, and <sup>1</sup>H and <sup>13</sup>C-NMR spectroscopy. The electronic properties were examined at the B3LYP/6-311G(d,p) level through frontier molecular orbital (FMO) analysis, which revealed a HOMO–LUMO gap of 4.36 eV, indicating significant kinetic stability. Nonlinear optical (NLO) analyses revealed a first-order hyperpolarizability (β<sub>tot</sub>) of 2.09 × 10<sup>−30</sup> esu, approximately 11 times greater than that of urea, suggesting strong NLO potential. Global reactivity descriptors showed a high ionization potential (6.18 eV), electron affinity (1.82 eV), and electrophilicity index (8.25 eV), indicating <b>MPB</b>’s stability and moderate reactivity. MEP, ELF, and LOL analyses highlighted electrophilic and nucleophilic regions of <b>MPB</b>. Molecular docking studies demonstrated that <b>MPB</b> binds effectively to acetylcholinesterase (AChE), butyrylcholinesterase (BChE), and cyclooxygenases (COX-1 and COX-2), with interactions including <i>π</i>–<i>π</i> stacking (e.g., with Trp86, Phe297, and Tyr385) and multiple hydrogen bonds. Induced Fit Docking revealed conformational adaptability within the active sites. Molecular dynamics (MD) simulations over 200 ns confirmed the structural stability of <b>MPB</b>–protein complexes, with RMSD values around 1.5–2.0 Å. Markov State Model analyses (PCA, TICA-FES) further revealed distinct energy landscapes and conformational constraints, particularly for AChE and BChE, where <b>MPB</b> showed superior stability compared to reference inhibitors. These findings underscore <b>MPB</b>’s potential as a multifunctional pharmacophore with notable enzyme-inhibitory capabilities.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"37 2","pages":"1011 - 1039"},"PeriodicalIF":2.2000,"publicationDate":"2025-09-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Structural Chemistry","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s11224-025-02610-7","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
Abstract
In this study, a new 1,2,4-triazole derivative, 4-(((3-ethyl-5-oxo-1,5-dihydro-4H-1,2,4-triazol-4-yl)imino)methyl)-2-methoxyphenyl benzoate (MPB), was synthesized and structurally confirmed using FTIR, UV–Vis, and 1H and 13C-NMR spectroscopy. The electronic properties were examined at the B3LYP/6-311G(d,p) level through frontier molecular orbital (FMO) analysis, which revealed a HOMO–LUMO gap of 4.36 eV, indicating significant kinetic stability. Nonlinear optical (NLO) analyses revealed a first-order hyperpolarizability (βtot) of 2.09 × 10−30 esu, approximately 11 times greater than that of urea, suggesting strong NLO potential. Global reactivity descriptors showed a high ionization potential (6.18 eV), electron affinity (1.82 eV), and electrophilicity index (8.25 eV), indicating MPB’s stability and moderate reactivity. MEP, ELF, and LOL analyses highlighted electrophilic and nucleophilic regions of MPB. Molecular docking studies demonstrated that MPB binds effectively to acetylcholinesterase (AChE), butyrylcholinesterase (BChE), and cyclooxygenases (COX-1 and COX-2), with interactions including π–π stacking (e.g., with Trp86, Phe297, and Tyr385) and multiple hydrogen bonds. Induced Fit Docking revealed conformational adaptability within the active sites. Molecular dynamics (MD) simulations over 200 ns confirmed the structural stability of MPB–protein complexes, with RMSD values around 1.5–2.0 Å. Markov State Model analyses (PCA, TICA-FES) further revealed distinct energy landscapes and conformational constraints, particularly for AChE and BChE, where MPB showed superior stability compared to reference inhibitors. These findings underscore MPB’s potential as a multifunctional pharmacophore with notable enzyme-inhibitory capabilities.
期刊介绍:
Structural Chemistry is an international forum for the publication of peer-reviewed original research papers that cover the condensed and gaseous states of matter and involve numerous techniques for the determination of structure and energetics, their results, and the conclusions derived from these studies. The journal overcomes the unnatural separation in the current literature among the areas of structure determination, energetics, and applications, as well as builds a bridge to other chemical disciplines. Ist comprehensive coverage encompasses broad discussion of results, observation of relationships among various properties, and the description and application of structure and energy information in all domains of chemistry.
We welcome the broadest range of accounts of research in structural chemistry involving the discussion of methodologies and structures,experimental, theoretical, and computational, and their combinations. We encourage discussions of structural information collected for their chemicaland biological significance.