{"title":"Quantum density principle governs DNA mutation fundamentals","authors":"Faisal Harold O. Haider, Micah Danielle Lojera","doi":"10.1007/s10910-025-01768-z","DOIUrl":null,"url":null,"abstract":"<div><p>Spontaneous mutations arising from DNA base tautomerization represent a significant source of genetic variation driving evolution. Standard quantum mechanical models encounter challenges in fully accounting for observed mutation rates and their temperature resistance. We present a mathematical framework examining a potentially overdetermined system where proton wavefunctions must satisfy multiple boundary conditions across tunneling barriers. Mathematical consistency considerations (analyticity, boundary matching, unitarity, causality, and thermodynamic consistency) suggest a correction factor <span>\\(\\gamma (\\rho ) = (1 - \\rho _2/\\rho _1)^{-1/2}\\)</span>, where <span>\\(\\rho _1\\)</span> and <span>\\(\\rho _2\\)</span> characterize probability and kinetic energy densities. This framework appears consistent with recent information-theoretic work based on quantum Fisher information principles. Our approach predicts experimentally observed phenomena including sequence-specific mutation rates, kinetic isotope effects, and non-Arrhenius temperature dependencies, with predictions aligning with experimental measurements across multiple datasets. We discuss how multi-isotopologue studies and single-molecule techniques might provide experimental validation, and compare our framework with alternative classical mechanisms. Our treatment enables computational identification of potential mutation hotspots with implications for understanding evolutionary processes and cancer mutagenesis. </p></div>","PeriodicalId":648,"journal":{"name":"Journal of Mathematical Chemistry","volume":"64 3","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2026-02-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Mathematical Chemistry","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s10910-025-01768-z","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
Abstract
Spontaneous mutations arising from DNA base tautomerization represent a significant source of genetic variation driving evolution. Standard quantum mechanical models encounter challenges in fully accounting for observed mutation rates and their temperature resistance. We present a mathematical framework examining a potentially overdetermined system where proton wavefunctions must satisfy multiple boundary conditions across tunneling barriers. Mathematical consistency considerations (analyticity, boundary matching, unitarity, causality, and thermodynamic consistency) suggest a correction factor \(\gamma (\rho ) = (1 - \rho _2/\rho _1)^{-1/2}\), where \(\rho _1\) and \(\rho _2\) characterize probability and kinetic energy densities. This framework appears consistent with recent information-theoretic work based on quantum Fisher information principles. Our approach predicts experimentally observed phenomena including sequence-specific mutation rates, kinetic isotope effects, and non-Arrhenius temperature dependencies, with predictions aligning with experimental measurements across multiple datasets. We discuss how multi-isotopologue studies and single-molecule techniques might provide experimental validation, and compare our framework with alternative classical mechanisms. Our treatment enables computational identification of potential mutation hotspots with implications for understanding evolutionary processes and cancer mutagenesis.
期刊介绍:
The Journal of Mathematical Chemistry (JOMC) publishes original, chemically important mathematical results which use non-routine mathematical methodologies often unfamiliar to the usual audience of mainstream experimental and theoretical chemistry journals. Furthermore JOMC publishes papers on novel applications of more familiar mathematical techniques and analyses of chemical problems which indicate the need for new mathematical approaches.
Mathematical chemistry is a truly interdisciplinary subject, a field of rapidly growing importance. As chemistry becomes more and more amenable to mathematically rigorous study, it is likely that chemistry will also become an alert and demanding consumer of new mathematical results. The level of complexity of chemical problems is often very high, and modeling molecular behaviour and chemical reactions does require new mathematical approaches. Chemistry is witnessing an important shift in emphasis: simplistic models are no longer satisfactory, and more detailed mathematical understanding of complex chemical properties and phenomena are required. From theoretical chemistry and quantum chemistry to applied fields such as molecular modeling, drug design, molecular engineering, and the development of supramolecular structures, mathematical chemistry is an important discipline providing both explanations and predictions. JOMC has an important role in advancing chemistry to an era of detailed understanding of molecules and reactions.